4UJD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UJD_001 | No text annotation | ||
| HL_4UJD_002 | No text annotation | ||
| HL_4UJD_003 | No text annotation | ||
| HL_4UJD_004 | No text annotation | ||
| HL_4UJD_005 | No text annotation | ||
| HL_4UJD_122 | T-loop with 1 bulged base | ||
| HL_4UJD_006 | No text annotation | ||
| HL_4UJD_007 | T-loop with unstacked turn | ||
| HL_4UJD_008 | No text annotation | ||
| HL_4UJD_123 | T-loop related | ||
| HL_4UJD_009 | Pseudoknot geometry | ||
| HL_4UJD_010 | GNRA | ||
| HL_4UJD_011 | No text annotation | ||
| HL_4UJD_012 | No text annotation | ||
| HL_4UJD_124 | No text annotation | ||
| HL_4UJD_013 | No text annotation | ||
| HL_4UJD_014 | T-loop with 2 stacked bulged bases | ||
| HL_4UJD_015 | No text annotation | ||
| HL_4UJD_125 | No text annotation | ||
| HL_4UJD_016 | GNRA | ||
| HL_4UJD_017 | No text annotation | ||
| HL_4UJD_018 | No text annotation | ||
| HL_4UJD_019 | No text annotation | ||
| HL_4UJD_137 | No text annotation | ||
| HL_4UJD_020 | No text annotation | ||
| HL_4UJD_021 | No text annotation | ||
| HL_4UJD_022 | No text annotation | ||
| HL_4UJD_023 | Externally structured | ||
| HL_4UJD_024 | No text annotation | ||
| HL_4UJD_025 | No text annotation | ||
| HL_4UJD_026 | GNRA | ||
| HL_4UJD_027 | No text annotation | ||
| HL_4UJD_028 | No text annotation | ||
| HL_4UJD_029 | No text annotation | ||
| HL_4UJD_030 | GNRA | ||
| HL_4UJD_031 | T-loop with 2 stacked bulged bases | ||
| HL_4UJD_032 | No text annotation | ||
| HL_4UJD_138 | Pseudoknot geometry with 3' bulge | ||
| HL_4UJD_033 | GNRA variation | ||
| HL_4UJD_034 | No text annotation | ||
| HL_4UJD_139 | Mini UNCG | ||
| HL_4UJD_035 | No text annotation | ||
| HL_4UJD_036 | No text annotation | ||
| HL_4UJD_037 | GNRA | ||
| HL_4UJD_038 | No text annotation | ||
| HL_4UJD_039 | No text annotation | ||
| HL_4UJD_040 | No text annotation | ||
| HL_4UJD_041 | No text annotation | ||
| HL_4UJD_042 | No text annotation | ||
| HL_4UJD_043 | GNRA | ||
| HL_4UJD_044 | UNCG | ||
| HL_4UJD_045 | No text annotation | ||
| HL_4UJD_046 | No text annotation | ||
| HL_4UJD_047 | No text annotation | ||
| HL_4UJD_048 | GNRA | ||
| HL_4UJD_049 | GNRA | ||
| HL_4UJD_050 | No text annotation | ||
| HL_4UJD_051 | No text annotation | ||
| HL_4UJD_052 | No text annotation | ||
| HL_4UJD_053 | No text annotation | ||
| HL_4UJD_140 | No text annotation | ||
| HL_4UJD_054 | No text annotation | ||
| HL_4UJD_055 | No text annotation | ||
| HL_4UJD_056 | No text annotation | ||
| HL_4UJD_057 | No text annotation | ||
| HL_4UJD_058 | Pseudoknot geometry | ||
| HL_4UJD_059 | No text annotation | ||
| HL_4UJD_060 | GNRA with extra cWW | ||
| HL_4UJD_126 | GNRA | ||
| HL_4UJD_061 | No text annotation | ||
| HL_4UJD_062 | No text annotation | ||
| HL_4UJD_063 | No text annotation | ||
| HL_4UJD_141 | GNRA variation | ||
| HL_4UJD_064 | No text annotation | ||
| HL_4UJD_065 | GNRA | ||
| HL_4UJD_066 | GNRA | ||
| HL_4UJD_067 | Ribsomal LSU H95 | ||
| HL_4UJD_068 | No text annotation | ||
| HL_4UJD_127 | No text annotation | ||
| HL_4UJD_069 | No text annotation | ||
| HL_4UJD_070 | No text annotation | ||
| HL_4UJD_071 | No text annotation | ||
| HL_4UJD_142 | No text annotation | ||
| HL_4UJD_072 | Pseudoknot with intercalation | ||
| HL_4UJD_073 | No text annotation | ||
| HL_4UJD_128 | No text annotation | ||
| HL_4UJD_074 | No text annotation | ||
| HL_4UJD_075 | No text annotation | ||
| HL_4UJD_076 | No text annotation | ||
| HL_4UJD_077 | GNRA | ||
| HL_4UJD_078 | tRNA D-loop | ||
| HL_4UJD_079 | tRNA anticodon loop | ||
| HL_4UJD_080 | T-loop with 2 stacked bulged bases | ||
| HL_4UJD_081 | No text annotation | ||
| HL_4UJD_082 | No text annotation | ||
| HL_4UJD_083 | No text annotation | ||
| HL_4UJD_084 | No text annotation | ||
| HL_4UJD_085 | No text annotation | ||
| HL_4UJD_086 | No text annotation | ||
| HL_4UJD_129 | No text annotation | ||
| HL_4UJD_087 | No text annotation | ||
| HL_4UJD_088 | No text annotation | ||
| HL_4UJD_089 | No text annotation | ||
| HL_4UJD_090 | GNRA related | ||
| HL_4UJD_091 | No text annotation | ||
| HL_4UJD_130 | No text annotation | ||
| HL_4UJD_092 | No text annotation | ||
| HL_4UJD_093 | T-loop with 2 stacked bulged bases | ||
| HL_4UJD_094 | No text annotation | ||
| HL_4UJD_095 | No text annotation | ||
| HL_4UJD_096 | No text annotation | ||
| HL_4UJD_097 | UNCG | ||
| HL_4UJD_098 | No text annotation | ||
| HL_4UJD_099 | No text annotation | ||
| HL_4UJD_131 | No text annotation | ||
| HL_4UJD_143 | No text annotation | ||
| HL_4UJD_100 | No text annotation | ||
| HL_4UJD_101 | GNRA variation | ||
| HL_4UJD_102 | No text annotation | ||
| HL_4UJD_103 | No text annotation | ||
| HL_4UJD_104 | No text annotation | ||
| HL_4UJD_144 | No text annotation | ||
| HL_4UJD_105 | No text annotation | ||
| HL_4UJD_106 | GNRA | ||
| HL_4UJD_132 | No text annotation | ||
| HL_4UJD_107 | No text annotation | ||
| HL_4UJD_133 | No text annotation | ||
| HL_4UJD_108 | No text annotation | ||
| HL_4UJD_145 | No text annotation | ||
| HL_4UJD_109 | GNRA | ||
| HL_4UJD_110 | GNRA | ||
| HL_4UJD_111 | No text annotation | ||
| HL_4UJD_112 | No text annotation | ||
| HL_4UJD_146 | GNRA wlth extra near cWW | ||
| HL_4UJD_134 | GNRA with extra cWW | ||
| HL_4UJD_113 | GNRA | ||
| HL_4UJD_114 | No text annotation | ||
| HL_4UJD_115 | No text annotation | ||
| HL_4UJD_116 | tRNA anticodon loop | ||
| HL_4UJD_135 | GNRA | ||
| HL_4UJD_117 | GNRA | ||
| HL_4UJD_118 | No text annotation | ||
| HL_4UJD_119 | No text annotation | ||
| HL_4UJD_136 | No text annotation | ||
| HL_4UJD_120 | GNRA | ||
| HL_4UJD_121 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UJD_079 | 1/A2/2590:2591, 1/A2/2701:2703 | Single bulged A | geometric IL_4L8H_001 IL_14190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UJD_001 | No text annotation | ||
| IL_4UJD_249 | No text annotation | ||
| IL_4UJD_318 | No text annotation | ||
| IL_4UJD_002 | Other IL | ||
| IL_4UJD_003 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4UJD_250 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJD_005 | No text annotation | ||
| IL_4UJD_251 | No text annotation | ||
| IL_4UJD_319 | No text annotation | ||
| IL_4UJD_006 | Minor groove platform | ||
| IL_4UJD_007 | Isolated non-canonical cWW pair | ||
| IL_4UJD_320 | No text annotation | ||
| IL_4UJD_252 | Isolated non-canonical cWW pair | ||
| IL_4UJD_008 | Single bulged A | ||
| IL_4UJD_009 | No text annotation | ||
| IL_4UJD_253 | No text annotation | ||
| IL_4UJD_010 | Single stack bend | ||
| IL_4UJD_011 | Triple sheared with non-canonical cWW | ||
| IL_4UJD_012 | No text annotation | ||
| IL_4UJD_013 | Isolated non-canonical cWW pair | ||
| IL_4UJD_014 | No text annotation | ||
| IL_4UJD_321 | No text annotation | ||
| IL_4UJD_254 | No text annotation | ||
| IL_4UJD_255 | Isolated non-canonical cWW pair | ||
| IL_4UJD_322 | No text annotation | ||
| IL_4UJD_015 | No text annotation | ||
| IL_4UJD_016 | No text annotation | ||
| IL_4UJD_323 | No text annotation | ||
| IL_4UJD_017 | No text annotation | ||
| IL_4UJD_018 | Isolated non-canonical cWW pair | ||
| IL_4UJD_019 | Isolated non-canonical cWW pair | ||
| IL_4UJD_020 | No text annotation | ||
| IL_4UJD_256 | No text annotation | ||
| IL_4UJD_324 | No text annotation | ||
| IL_4UJD_257 | No text annotation | ||
| IL_4UJD_021 | No text annotation | ||
| IL_4UJD_022 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_023 | No text annotation | ||
| IL_4UJD_024 | Isolated non-canonical cWW pair | ||
| IL_4UJD_258 | No text annotation | ||
| IL_4UJD_025 | No text annotation | ||
| IL_4UJD_026 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_259 | Multiple bulged bases | ||
| IL_4UJD_027 | Multiple bulged bases | ||
| IL_4UJD_028 | No text annotation | ||
| IL_4UJD_029 | No text annotation | ||
| IL_4UJD_260 | Isolated non-canonical cWW pair | ||
| IL_4UJD_030 | Multiple bulged bases | ||
| IL_4UJD_031 | No text annotation | ||
| IL_4UJD_261 | Isolated non-canonical cWW pair | ||
| IL_4UJD_032 | No text annotation | ||
| IL_4UJD_262 | No text annotation | ||
| IL_4UJD_033 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_034 | Isolated non-canonical cWW pair | ||
| IL_4UJD_035 | No text annotation | ||
| IL_4UJD_036 | No text annotation | ||
| IL_4UJD_325 | No text annotation | ||
| IL_4UJD_263 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_037 | No text annotation | ||
| IL_4UJD_038 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_039 | Single bulged A | ||
| IL_4UJD_264 | No text annotation | ||
| IL_4UJD_040 | Minor groove platform | ||
| IL_4UJD_041 | Isolated non-canonical cWW pair | ||
| IL_4UJD_265 | No text annotation | ||
| IL_4UJD_042 | tHW-tHW cross-strand stack | ||
| IL_4UJD_266 | Triple sheared with non-canonical cWW | ||
| IL_4UJD_043 | No text annotation | ||
| IL_4UJD_044 | Major groove platform with extra cWW | ||
| IL_4UJD_045 | Single bulged U | ||
| IL_4UJD_046 | Multiple bulged bases | ||
| IL_4UJD_047 | Isolated non-canonical cWW pair | ||
| IL_4UJD_048 | No text annotation | ||
| IL_4UJD_049 | Multiple bulged bases | ||
| IL_4UJD_050 | Single bulged G | ||
| IL_4UJD_051 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4UJD_267 | No text annotation | ||
| IL_4UJD_052 | Minor groove platform | ||
| IL_4UJD_326 | C-loop with bulged stacked A's | ||
| IL_4UJD_053 | No text annotation | ||
| IL_4UJD_054 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_268 | Isolated non-canonical cWW pair | ||
| IL_4UJD_055 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_056 | No text annotation | ||
| IL_4UJD_269 | No text annotation | ||
| IL_4UJD_057 | No text annotation | ||
| IL_4UJD_058 | Single bulged A | ||
| IL_4UJD_059 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_270 | Isolated non-canonical cWW pair | ||
| IL_4UJD_060 | UAA/GAN | ||
| IL_4UJD_061 | Isolated non-canonical cWW pair | ||
| IL_4UJD_062 | Multiple bulged bases | ||
| IL_4UJD_271 | Partly complementary | ||
| IL_4UJD_063 | No text annotation | ||
| IL_4UJD_064 | No text annotation | ||
| IL_4UJD_065 | Single bulged U | ||
| IL_4UJD_066 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_067 | Isolated cWS basepair | ||
| IL_4UJD_068 | Isolated non-canonical cWW pair | ||
| IL_4UJD_272 | Single bulged A | ||
| IL_4UJD_069 | No text annotation | ||
| IL_4UJD_327 | No text annotation | ||
| IL_4UJD_273 | No text annotation | ||
| IL_4UJD_070 | Single bulged A | ||
| IL_4UJD_071 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_4UJD_072 | Major groove platform; stack outside cWW | ||
| IL_4UJD_274 | No text annotation | ||
| IL_4UJD_073 | C-loop | ||
| IL_4UJD_074 | UAA/GAN | ||
| IL_4UJD_075 | No text annotation | ||
| IL_4UJD_275 | Partly complementary | ||
| IL_4UJD_076 | Isolated cWH basepair | ||
| IL_4UJD_077 | Isolated non-canonical cWW pair | ||
| IL_4UJD_078 | Triple sheared | ||
| IL_4UJD_080 | Single stack bend | ||
| IL_4UJD_081 | No text annotation | ||
| IL_4UJD_276 | No text annotation | ||
| IL_4UJD_082 | Minor groove platform | ||
| IL_4UJD_277 | No text annotation | ||
| IL_4UJD_328 | No text annotation | ||
| IL_4UJD_083 | No text annotation | ||
| IL_4UJD_084 | No text annotation | ||
| IL_4UJD_085 | Isolated tWW turn | ||
| IL_4UJD_086 | Major groove platform; stack outside cWW | ||
| IL_4UJD_278 | No text annotation | ||
| IL_4UJD_087 | Intercalated tWH | ||
| IL_4UJD_088 | No text annotation | ||
| IL_4UJD_089 | Isolated non-canonical cWW pair | ||
| IL_4UJD_090 | No text annotation | ||
| IL_4UJD_091 | Single bulged A | ||
| IL_4UJD_092 | Kink-turn related | ||
| IL_4UJD_093 | Major groove intercalation | ||
| IL_4UJD_094 | Multiple bulged bases | ||
| IL_4UJD_095 | No text annotation | ||
| IL_4UJD_096 | No text annotation | ||
| IL_4UJD_097 | No text annotation | ||
| IL_4UJD_098 | Single stack bend | ||
| IL_4UJD_099 | Bulged stacked bases | ||
| IL_4UJD_100 | No text annotation | ||
| IL_4UJD_101 | No text annotation | ||
| IL_4UJD_102 | Major groove platform with intercalation | ||
| IL_4UJD_279 | Single bulged U | ||
| IL_4UJD_103 | Isolated non-canonical cWW pair | ||
| IL_4UJD_104 | Minor groove platform | ||
| IL_4UJD_105 | No text annotation | ||
| IL_4UJD_280 | No text annotation | ||
| IL_4UJD_281 | No text annotation | ||
| IL_4UJD_329 | No text annotation | ||
| IL_4UJD_106 | No text annotation | ||
| IL_4UJD_107 | No text annotation | ||
| IL_4UJD_282 | No text annotation | ||
| IL_4UJD_283 | No text annotation | ||
| IL_4UJD_108 | No text annotation | ||
| IL_4UJD_109 | No text annotation | ||
| IL_4UJD_110 | Single bulged A | ||
| IL_4UJD_111 | Isolated tHS basepair with bulges | ||
| IL_4UJD_112 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_113 | Single stack bend | ||
| IL_4UJD_114 | Major groove platform | ||
| IL_4UJD_115 | Isolated non-canonical cWW pair | ||
| IL_4UJD_116 | Major groove platform | ||
| IL_4UJD_117 | Major groove minor groove platform with extra cWW | ||
| IL_4UJD_118 | No text annotation | ||
| IL_4UJD_119 | Major groove platform | ||
| IL_4UJD_120 | Isolated non-canonical cWW with bulges | ||
| IL_4UJD_284 | No text annotation | ||
| IL_4UJD_121 | No text annotation | ||
| IL_4UJD_122 | Isolated non-canonical cWW pair | ||
| IL_4UJD_123 | No text annotation | ||
| IL_4UJD_124 | Isolated non-canonical cWW pair | ||
| IL_4UJD_285 | Single bulged A | ||
| IL_4UJD_125 | No text annotation | ||
| IL_4UJD_286 | No text annotation | ||
| IL_4UJD_126 | No text annotation | ||
| IL_4UJD_127 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJD_128 | No text annotation | ||
| IL_4UJD_330 | No text annotation | ||
| IL_4UJD_287 | No text annotation | ||
| IL_4UJD_129 | UAA/GAN related | ||
| IL_4UJD_130 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_288 | No text annotation | ||
| IL_4UJD_131 | Isolated cWS basepair | ||
| IL_4UJD_132 | UAA/GAN with extra cWW | ||
| IL_4UJD_289 | UAA/GAN | ||
| IL_4UJD_133 | No text annotation | ||
| IL_4UJD_290 | Minor groove platform | ||
| IL_4UJD_134 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_291 | No text annotation | ||
| IL_4UJD_292 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_135 | Isolated non-canonical cWW pair | ||
| IL_4UJD_331 | No text annotation | ||
| IL_4UJD_136 | No text annotation | ||
| IL_4UJD_137 | No text annotation | ||
| IL_4UJD_138 | Isolated non-canonical cWW pair | ||
| IL_4UJD_293 | Multiple bulged bases | ||
| IL_4UJD_294 | No text annotation | ||
| IL_4UJD_139 | No text annotation | ||
| IL_4UJD_140 | No text annotation | ||
| IL_4UJD_141 | Minor groove platform | ||
| IL_4UJD_142 | Single bulged G | ||
| IL_4UJD_143 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_144 | No text annotation | ||
| IL_4UJD_145 | Single bulged U | ||
| IL_4UJD_295 | No text annotation | ||
| IL_4UJD_146 | No text annotation | ||
| IL_4UJD_147 | No text annotation | ||
| IL_4UJD_148 | Single bulged C | ||
| IL_4UJD_149 | Double sheared; A in syn | ||
| IL_4UJD_296 | Isolated non-canonical cWW with bulges | ||
| IL_4UJD_150 | No text annotation | ||
| IL_4UJD_151 | Single bulged U | ||
| IL_4UJD_152 | Single stack bend with SAM intercalation | ||
| IL_4UJD_153 | Multiple bulged bases | ||
| IL_4UJD_154 | Minor groove platform related | ||
| IL_4UJD_297 | No text annotation | ||
| IL_4UJD_155 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4UJD_156 | Isolated cWH basepair | ||
| IL_4UJD_157 | Isolated non-canonical cWW pair | ||
| IL_4UJD_158 | No text annotation | ||
| IL_4UJD_159 | No text annotation | ||
| IL_4UJD_160 | No text annotation | ||
| IL_4UJD_298 | No text annotation | ||
| IL_4UJD_332 | No text annotation | ||
| IL_4UJD_161 | No text annotation | ||
| IL_4UJD_162 | No text annotation | ||
| IL_4UJD_163 | No text annotation | ||
| IL_4UJD_164 | No text annotation | ||
| IL_4UJD_165 | No text annotation | ||
| IL_4UJD_166 | No text annotation | ||
| IL_4UJD_333 | Isolated non-canonical cWW pair | ||
| IL_4UJD_167 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_168 | Stack and bulge | ||
| IL_4UJD_299 | No text annotation | ||
| IL_4UJD_169 | Triple sheared related | ||
| IL_4UJD_170 | No text annotation | ||
| IL_4UJD_171 | Minor groove platform | ||
| IL_4UJD_334 | No text annotation | ||
| IL_4UJD_172 | No text annotation | ||
| IL_4UJD_173 | No text annotation | ||
| IL_4UJD_174 | Multiple bulged bases | ||
| IL_4UJD_175 | No text annotation | ||
| IL_4UJD_300 | No text annotation | ||
| IL_4UJD_176 | No text annotation | ||
| IL_4UJD_177 | Isolated non-canonical cWW contact | ||
| IL_4UJD_178 | No text annotation | ||
| IL_4UJD_301 | No text annotation | ||
| IL_4UJD_179 | No text annotation | ||
| IL_4UJD_302 | No text annotation | ||
| IL_4UJD_180 | Kink-turn with non-sequential stacking | ||
| IL_4UJD_181 | No text annotation | ||
| IL_4UJD_182 | No text annotation | ||
| IL_4UJD_183 | Isolated cWH basepair | ||
| IL_4UJD_184 | Isolated near basepair | ||
| IL_4UJD_185 | Single bulged U | ||
| IL_4UJD_186 | C-loop | ||
| IL_4UJD_187 | Single bulged G | ||
| IL_4UJD_188 | Single bulged A | ||
| IL_4UJD_335 | No text annotation | ||
| IL_4UJD_189 | No text annotation | ||
| IL_4UJD_190 | No text annotation | ||
| IL_4UJD_191 | Isolated non-canonical cWW pair | ||
| IL_4UJD_192 | Kink-turn related | ||
| IL_4UJD_193 | Isolated cWH basepair | ||
| IL_4UJD_194 | Isolated non-canonical cWW pair | ||
| IL_4UJD_195 | tSH-tHW-tHS | ||
| IL_4UJD_196 | Multiple bulged bases | ||
| IL_4UJD_197 | No text annotation | ||
| IL_4UJD_198 | Major groove minor groove platform; mini C-loop | ||
| IL_4UJD_199 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_200 | No text annotation | ||
| IL_4UJD_201 | Isolated cWH basepair | ||
| IL_4UJD_202 | Major groove platform; stack outside cWW | ||
| IL_4UJD_303 | Isolated non-canonical cWW pair | ||
| IL_4UJD_336 | No text annotation | ||
| IL_4UJD_203 | Isolated non-canonical cWW pair | ||
| IL_4UJD_204 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_205 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_206 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_207 | Kink-turn related | ||
| IL_4UJD_337 | Kink-turn | ||
| IL_4UJD_208 | Other IL | ||
| IL_4UJD_209 | tSH-tHW-tHS | ||
| IL_4UJD_210 | No text annotation | ||
| IL_4UJD_211 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_212 | Isolated non-canonical cWW contact | ||
| IL_4UJD_213 | Single bulged U | ||
| IL_4UJD_214 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4UJD_304 | No text annotation | ||
| IL_4UJD_215 | No text annotation | ||
| IL_4UJD_216 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_338 | No text annotation | ||
| IL_4UJD_305 | No text annotation | ||
| IL_4UJD_217 | No text annotation | ||
| IL_4UJD_306 | No text annotation | ||
| IL_4UJD_218 | Isolated non-canonical cWW pair | ||
| IL_4UJD_219 | Minor groove platform | ||
| IL_4UJD_220 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_307 | Isolated non-canonical cWW pair | ||
| IL_4UJD_308 | No text annotation | ||
| IL_4UJD_339 | No text annotation | ||
| IL_4UJD_221 | No text annotation | ||
| IL_4UJD_309 | No text annotation | ||
| IL_4UJD_222 | No text annotation | ||
| IL_4UJD_223 | Single bulged U | ||
| IL_4UJD_224 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_310 | Multiple bulged bases | ||
| IL_4UJD_225 | Minor groove platform with extra cWW | ||
| IL_4UJD_226 | Single bulged A | ||
| IL_4UJD_227 | Isolated cWH basepair | ||
| IL_4UJD_228 | Isolated non-canonical cWW contact | ||
| IL_4UJD_229 | No text annotation | ||
| IL_4UJD_311 | No text annotation | ||
| IL_4UJD_230 | No text annotation | ||
| IL_4UJD_231 | No text annotation | ||
| IL_4UJD_312 | No text annotation | ||
| IL_4UJD_232 | No text annotation | ||
| IL_4UJD_233 | Isolated non-canonical cWW pair | ||
| IL_4UJD_313 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_314 | No text annotation | ||
| IL_4UJD_234 | No text annotation | ||
| IL_4UJD_235 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_340 | Isolated non-canonical cWW pair | ||
| IL_4UJD_236 | No text annotation | ||
| IL_4UJD_237 | No text annotation | ||
| IL_4UJD_238 | No text annotation | ||
| IL_4UJD_239 | Isolated non-canonical cWW pair | ||
| IL_4UJD_240 | Non canonical cWW and near pair | ||
| IL_4UJD_241 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_315 | Isolated non-canonical cWW pair | ||
| IL_4UJD_242 | Double sheared | ||
| IL_4UJD_243 | No text annotation | ||
| IL_4UJD_244 | Isolated non-canonical cWW pair | ||
| IL_4UJD_245 | Double sheared | ||
| IL_4UJD_246 | Tandem non-canonical cWW pairs | ||
| IL_4UJD_316 | Triple sheared | ||
| IL_4UJD_247 | No text annotation | ||
| IL_4UJD_317 | Partly complementary | ||
| IL_4UJD_248 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UJD_028 | No text annotation | ||
| J3_4UJD_001 | No text annotation | ||
| J3_4UJD_050 | No text annotation | ||
| J3_4UJD_029 | No text annotation | ||
| J3_4UJD_051 | No text annotation | ||
| J3_4UJD_030 | No text annotation | ||
| J3_4UJD_052 | No text annotation | ||
| J3_4UJD_031 | No text annotation | ||
| J3_4UJD_032 | No text annotation | ||
| J3_4UJD_053 | No text annotation | ||
| J3_4UJD_033 | No text annotation | ||
| J3_4UJD_002 | No text annotation | ||
| J3_4UJD_003 | No text annotation | ||
| J3_4UJD_034 | No text annotation | ||
| J3_4UJD_054 | No text annotation | ||
| J3_4UJD_004 | No text annotation | ||
| J3_4UJD_055 | No text annotation | ||
| J3_4UJD_035 | No text annotation | ||
| J3_4UJD_005 | No text annotation | ||
| J3_4UJD_006 | No text annotation | ||
| J3_4UJD_056 | No text annotation | ||
| J3_4UJD_036 | No text annotation | ||
| J3_4UJD_007 | No text annotation | ||
| J3_4UJD_008 | No text annotation | ||
| J3_4UJD_037 | No text annotation | ||
| J3_4UJD_057 | No text annotation | ||
| J3_4UJD_038 | No text annotation | ||
| J3_4UJD_058 | No text annotation | ||
| J3_4UJD_039 | No text annotation | ||
| J3_4UJD_009 | No text annotation | ||
| J3_4UJD_010 | No text annotation | ||
| J3_4UJD_040 | No text annotation | ||
| J3_4UJD_059 | No text annotation | ||
| J3_4UJD_011 | No text annotation | ||
| J3_4UJD_041 | No text annotation | ||
| J3_4UJD_042 | No text annotation | ||
| J3_4UJD_012 | No text annotation | ||
| J3_4UJD_043 | No text annotation | ||
| J3_4UJD_013 | No text annotation | ||
| J3_4UJD_044 | No text annotation | ||
| J3_4UJD_014 | No text annotation | ||
| J3_4UJD_045 | No text annotation | ||
| J3_4UJD_015 | No text annotation | ||
| J3_4UJD_016 | No text annotation | ||
| J3_4UJD_060 | No text annotation | ||
| J3_4UJD_017 | No text annotation | ||
| J3_4UJD_018 | No text annotation | ||
| J3_4UJD_019 | No text annotation | ||
| J3_4UJD_020 | No text annotation | ||
| J3_4UJD_046 | No text annotation | ||
| J3_4UJD_021 | No text annotation | ||
| J3_4UJD_047 | No text annotation | ||
| J3_4UJD_022 | No text annotation | ||
| J3_4UJD_023 | No text annotation | ||
| J3_4UJD_024 | No text annotation | ||
| J3_4UJD_025 | No text annotation | ||
| J3_4UJD_026 | No text annotation | ||
| J3_4UJD_048 | No text annotation | ||
| J3_4UJD_027 | No text annotation | ||
| J3_4UJD_049 | No text annotation | ||
| J4_4UJD_001 | No text annotation | ||
| J4_4UJD_016 | No text annotation | ||
| J4_4UJD_002 | No text annotation | ||
| J4_4UJD_003 | No text annotation | ||
| J4_4UJD_004 | No text annotation | ||
| J4_4UJD_017 | No text annotation | ||
| J4_4UJD_005 | No text annotation | ||
| J4_4UJD_006 | No text annotation | ||
| J4_4UJD_007 | No text annotation | ||
| J4_4UJD_008 | No text annotation | ||
| J4_4UJD_009 | No text annotation | ||
| J4_4UJD_010 | No text annotation | ||
| J4_4UJD_011 | No text annotation | ||
| J4_4UJD_012 | No text annotation | ||
| J4_4UJD_013 | No text annotation | ||
| J4_4UJD_014 | No text annotation | ||
| J4_4UJD_015 | No text annotation | ||
| J5_4UJD_001 | No text annotation | ||
| J5_4UJD_002 | No text annotation | ||
| J5_4UJD_003 | No text annotation | ||
| J5_4UJD_008 | No text annotation | ||
| J5_4UJD_004 | No text annotation | ||
| J5_4UJD_005 | No text annotation | ||
| J5_4UJD_006 | No text annotation | ||
| J5_4UJD_009 | No text annotation | ||
| J5_4UJD_007 | No text annotation | ||
| J6_4UJD_005 | No text annotation | ||
| J6_4UJD_001 | No text annotation | ||
| J6_4UJD_006 | No text annotation | ||
| J6_4UJD_002 | No text annotation | ||
| J6_4UJD_007 | No text annotation | ||
| J6_4UJD_003 | No text annotation | ||
| J6_4UJD_008 | No text annotation | ||
| J6_4UJD_004 | No text annotation | ||
| J7_4UJD_001 | No text annotation | ||
| J9_4UJD_002 | No text annotation | ||
| J9_4UJD_001 | No text annotation |
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