HL_4UJD_008

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCUUGGGAAUGC

Length

12 nucleotides

Bulged bases

4UJD|1|A2|A|286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|279
4UJD|1|A2|C|280
4UJD|1|A2|U|281
4UJD|1|A2|U|282
4UJD|1|A2|G|283
4UJD|1|A2|G|284
4UJD|1|A2|G|285
4UJD|1|A2|A|286
4UJD|1|A2|A|287
4UJD|1|A2|U|288
4UJD|1|A2|G|289
4UJD|1|A2|C|290

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ao

60S RIBOSOMAL PROTEIN L36A