HL_4UJD_015

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUCGCACGAAAG

Length

12 nucleotides

Bulged bases

4UJD|1|A2|C|1347, 4UJD|1|A2|C|1349

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|1343
4UJD|1|A2|U|1344
4UJD|1|A2|C|1345
4UJD|1|A2|G|1346
4UJD|1|A2|C|1347
4UJD|1|A2|A|1348
4UJD|1|A2|C|1349
4UJD|1|A2|G|1350
4UJD|1|A2|A|1351
4UJD|1|A2|A|1352
4UJD|1|A2|A|1353
4UJD|1|A2|G|1354

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain AY

60S RIBOSOMAL PROTEIN L26