HL_4UJD_018

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|1416
4UJD|1|A2|C|1417
4UJD|1|A2|U|1418
4UJD|1|A2|C|1419
4UJD|1|A2|U|1420
4UJD|1|A2|C|1421
4UJD|1|A2|C|1422
4UJD|1|A2|A|1423
4UJD|1|A2|G|1424
4UJD|1|A2|U|1425
4UJD|1|A2|C|1426
4UJD|1|A2|C|1427
4UJD|1|A2|G|1428

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain AQ

60S RIBOSOMAL PROTEIN L18