HL_4UJD_019

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGCCGCGCCG

Length

10 nucleotides

Bulged bases

4UJD|1|A2|C|1462

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_019 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2644

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|C|1457
4UJD|1|A2|G|1458
4UJD|1|A2|C|1459
4UJD|1|A2|C|1460
4UJD|1|A2|G|1461
4UJD|1|A2|C|1462
4UJD|1|A2|G|1463
4UJD|1|A2|C|1464
4UJD|1|A2|C|1465
4UJD|1|A2|G|1466

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain Aa

60S RIBOSOMAL PROTEIN L27A