HL_4UJD_020

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4UJD|1|A2|A|1542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_020 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2829

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4UJD|1|A2|G|1540
4UJD|1|A2|G|1541
4UJD|1|A2|A|1542
4UJD|1|A2|A|1543
4UJD|1|A2|A|1544
4UJD|1|A2|C|1545

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain C1

Small subunit ribosomal RNA; SSU rRNA

Chain CN

40S RIBOSOMAL PROTEIN ES15