HL_4UJD_026

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

4UJD|1|A2|G|1847

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_026 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.1128

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|A2|G|1842
4UJD|1|A2|G|1843
4UJD|1|A2|U|1844
4UJD|1|A2|A|1845
4UJD|1|A2|A|1846
4UJD|1|A2|G|1847
4UJD|1|A2|C|1848

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AI

60S RIBOSOMAL PROTEIN L10