HL_4UJD_028

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAUAGACAGCACUGCCGAA

Length

19 nucleotides

Bulged bases

4UJD|1|A2|A|1938

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|U|1935
4UJD|1|A2|A|1936
4UJD|1|A2|U|1937
4UJD|1|A2|A|1938
4UJD|1|A2|G|1939
4UJD|1|A2|A|1940
4UJD|1|A2|C|1941
4UJD|1|A2|A|1942
4UJD|1|A2|G|1943
4UJD|1|A2|C|1944
4UJD|1|A2|A|1945
4UJD|1|A2|C|1997
4UJD|1|A2|U|1998
4UJD|1|A2|G|1999
4UJD|1|A2|C|2000
4UJD|1|A2|C|2001
4UJD|1|A2|G|2002
4UJD|1|A2|A|2003
4UJD|1|A2|A|2004

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AS

60S RIBOSOMAL PROTEIN L18A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40