HL_4UJD_029

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|C|2065

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2395

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|G|2063
4UJD|1|A2|G|2064
4UJD|1|A2|C|2065
4UJD|1|A2|G|2246
4UJD|1|A2|C|2247

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain AQ

60S RIBOSOMAL PROTEIN L18

Chain Ae

60S RIBOSOMAL PROTEIN L32

Chain At

60S RIBOSOMAL PROTEIN L28