HL_4UJD_035

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

4UJD|1|A2|U|2507, 4UJD|1|A2|C|2508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2228

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|G|2500
4UJD|1|A2|U|2501
4UJD|1|A2|U|2502
4UJD|1|A2|C|2503
4UJD|1|A2|A|2504
4UJD|1|A2|G|2505
4UJD|1|A2|A|2506
4UJD|1|A2|U|2507
4UJD|1|A2|C|2508
4UJD|1|A2|C|2509

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain AX

60S RIBOSOMAL PROTEIN L23A

Chain Ag

60S RIBOSOMAL PROTEIN L34