HL_4UJD_044

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4UJD|1|A2|U|2851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_044 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1712

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4UJD|1|A2|C|2849
4UJD|1|A2|U|2850
4UJD|1|A2|U|2851
4UJD|1|A2|C|2852
4UJD|1|A2|G|2853
4UJD|1|A2|G|2854

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain An

60S RIBOSOMAL PROTEIN L41

Chain Ap

60S RIBOSOMAL PROTEIN L37A

Chain C1

Small subunit ribosomal RNA; SSU rRNA