HL_4UJD_055

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4UJD|1|A2|G|4155

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.3979

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4UJD|1|A2|C|4153
4UJD|1|A2|U|4154
4UJD|1|A2|G|4155
4UJD|1|A2|G|4156
4UJD|1|A2|G|4157
4UJD|1|A2|G|4158
4UJD|1|A2|C|4159
4UJD|1|A2|G|4160
4UJD|1|A2|G|4161

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Ab

60S RIBOSOMAL PROTEIN L29

Chain BA

Transfer RNA; tRNA