HL_4UJD_058
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_058 not in the Motif Atlas
- Homologous match to HL_5TBW_057
- Geometric discrepancy: 0.1875
- The information below is about HL_5TBW_057
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
4UJD|1|A2|C|4230
4UJD|1|A2|A|4231
4UJD|1|A2|G|4232
4UJD|1|A2|A|4233
4UJD|1|A2|A|4234
4UJD|1|A2|G|4235
4UJD|1|A2|G|4236
4UJD|1|A2|G|4237
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AI
- 60S RIBOSOMAL PROTEIN L10
- Chain AT
- 60S RIBOSOMAL PROTEIN L21
- Chain Ao
- 60S RIBOSOMAL PROTEIN L36A
- Chain BA
- Transfer RNA; tRNA
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