HL_4UJD_059

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

4UJD|1|A2|C|4263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|U|4261
4UJD|1|A2|U|4262
4UJD|1|A2|C|4263
4UJD|1|A2|A|4264
4UJD|1|A2|G|4265
4UJD|1|A2|U|4266
4UJD|1|A2|A|4267
4UJD|1|A2|C|4268
4UJD|1|A2|G|4269

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AQ

60S RIBOSOMAL PROTEIN L18

Chain AT

60S RIBOSOMAL PROTEIN L21

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ab

60S RIBOSOMAL PROTEIN L29

Chain Ao

60S RIBOSOMAL PROTEIN L36A