HL_4UJD_066

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_066 not in the Motif Atlas

Geometric match to HL_5TBW_065

Geometric discrepancy: 0.2155

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|A2|C|4563
4UJD|1|A2|G|4564
4UJD|1|A2|A|4565
4UJD|1|A2|G|4566
4UJD|1|A2|A|4567
4UJD|1|A2|G|4568

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BB

EIF5B