HL_4UJD_071

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCUCCCUCGC

Length

10 nucleotides

Bulged bases

4UJD|1|A2|U|4981, 4UJD|1|A2|C|4982

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|4975
4UJD|1|A2|C|4976
4UJD|1|A2|U|4977
4UJD|1|A2|C|4978
4UJD|1|A2|C|4979
4UJD|1|A2|C|4980
4UJD|1|A2|U|4981
4UJD|1|A2|C|4982
4UJD|1|A2|G|4983
4UJD|1|A2|C|4984

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AU

60S RIBOSOMAL PROTEIN L22

Chain CI

40S RIBOSOMAL PROTEIN ES8