HL_4UJD_072
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_072 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.3025
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4UJD|1|A3|C|47
4UJD|1|A3|A|48
4UJD|1|A3|G|49
4UJD|1|A3|C|50
4UJD|1|A3|U|51
4UJD|1|A3|A|52
4UJD|1|A3|G|53
4UJD|1|A3|C|54
4UJD|1|A3|U|55
4UJD|1|A3|G|56
Current chains
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
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