HL_4UJD_079

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_079 not in the Motif Atlas

Homologous match to HL_6UFG_007

Geometric discrepancy: 0.1257

The information below is about HL_6UFG_007

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

4UJD|1|BA|A|31
4UJD|1|BA|U|32
4UJD|1|BA|U|33
4UJD|1|BA|G|34
4UJD|1|BA|A|35
4UJD|1|BA|A|36
4UJD|1|BA|A|37
4UJD|1|BA|A|38
4UJD|1|BA|U|39

Current chains

Chain BA

TRNA

Nearby chains

Chain BC

Internal ribosome entry site; IRES

Chain C1

Small subunit ribosomal RNA; SSU rRNA

Chain CQ

40S RIBOSOMAL PROTEIN US9