HL_4UJD_080

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_080 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.1011

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4UJD|1|BA|G|53
4UJD|1|BA|U|54
4UJD|1|BA|U|55
4UJD|1|BA|C|56
4UJD|1|BA|G|57
4UJD|1|BA|A|58
4UJD|1|BA|U|59
4UJD|1|BA|U|60
4UJD|1|BA|C|61

Current chains

Chain BA

TRNA

Nearby chains

Chain AJ

60S RIBOSOMAL PROTEIN L11

Chain Ao

60S RIBOSOMAL PROTEIN L36A