HL_4UJD_085

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUGGGUC

Length

8 nucleotides

Bulged bases

4UJD|1|BC|U|269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|BC|G|263
4UJD|1|BC|U|264
4UJD|1|BC|U|265
4UJD|1|BC|G|266
4UJD|1|BC|G|267
4UJD|1|BC|G|268
4UJD|1|BC|U|269
4UJD|1|BC|C|270

Current chains

Chain BC

HCV-IRES

Nearby chains

Chain C1

Small subunit ribosomal RNA; SSU rRNA

Chain CB

40S RIBOSOMAL PROTEIN ES1