HL_4UJD_087

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUGCGAGUG

Length

10 nucleotides

Bulged bases

4UJD|1|BC|U|305

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|BC|C|304
4UJD|1|BC|U|305
4UJD|1|BC|U|306
4UJD|1|BC|G|307
4UJD|1|BC|C|308
4UJD|1|BC|G|309
4UJD|1|BC|A|310
4UJD|1|BC|G|311
4UJD|1|BC|U|312
4UJD|1|BC|G|313

Current chains

Chain BC

HCV-IRES

Nearby chains

Chain Ca

40S RIBOSOMAL PROTEIN ES26