HL_4UJD_093

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

4UJD|1|C1|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_093 not in the Motif Atlas

Geometric match to HL_5TBW_005

Geometric discrepancy: 0.2056

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJD|1|C1|C|322
4UJD|1|C1|C|323
4UJD|1|C1|C|324
4UJD|1|C1|C|325
4UJD|1|C1|C|326
4UJD|1|C1|G|327
4UJD|1|C1|U|328
4UJD|1|C1|G|329

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CG

40S RIBOSOMAL PROTEIN ES6