HL_4UJD_097

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4UJD|1|C1|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_097 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.3859

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4UJD|1|C1|C|462
4UJD|1|C1|C|463
4UJD|1|C1|A|464
4UJD|1|C1|A|465
4UJD|1|C1|G|466
4UJD|1|C1|G|467

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain AV

60S RIBOSOMAL PROTEIN L23

Chain BB

EIF5B

Chain CG

40S RIBOSOMAL PROTEIN ES6