HL_4UJD_102
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 4UJD|1|C1|G|821
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_102 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.3489
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
4UJD|1|C1|U|820
4UJD|1|C1|G|821
4UJD|1|C1|U|822
4UJD|1|C1|U|823
4UJD|1|C1|C|824
4UJD|1|C1|A|825
4UJD|1|C1|A|826
4UJD|1|C1|A|827
4UJD|1|C1|G|828
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CE
- 40S RIBOSOMAL PROTEIN ES4
- Chain CJ
- 40S RIBOSOMAL PROTEIN US4
- Chain CY
- 40S RIBOSOMAL PROTEIN ES24
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