HL_4UJD_106

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_106 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1944

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|C1|C|994
4UJD|1|C1|G|995
4UJD|1|C1|A|996
4UJD|1|C1|A|997
4UJD|1|C1|A|998
4UJD|1|C1|G|999

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CN

40S RIBOSOMAL PROTEIN ES15

Chain Ca

40S RIBOSOMAL PROTEIN ES26