HL_4UJD_116

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCGUUCAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_116 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2741

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4UJD|1|C1|G|1459
4UJD|1|C1|C|1460
4UJD|1|C1|G|1461
4UJD|1|C1|U|1462
4UJD|1|C1|U|1463
4UJD|1|C1|C|1464
4UJD|1|C1|A|1465
4UJD|1|C1|G|1466
4UJD|1|C1|C|1467

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain BC

Internal ribosome entry site; IRES

Chain CR

40S RIBOSOMAL PROTEIN ES17

Chain Cg

40S RIBOSOMAL PROTEIN RACK1