HL_4UJD_120

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCCCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_120 not in the Motif Atlas

Geometric match to HL_3SUX_002

Geometric discrepancy: 0.3617

The information below is about HL_3SUX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4UJD|1|C1|G|1763
4UJD|1|C1|G|1764
4UJD|1|C1|C|1765
4UJD|1|C1|C|1766
4UJD|1|C1|C|1767
4UJD|1|C1|A|1768
4UJD|1|C1|C|1769

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains