HL_4UJD_124

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|1153
4UJD|1|A2|G|1154
4UJD|1|A2|A|1155
4UJD|1|A2|C|1156
4UJD|1|A2|U|1157
4UJD|1|A2|G|1158
4UJD|1|A2|U|1159
4UJD|1|A2|C|1160
4UJD|1|A2|C|1161
4UJD|1|A2|C|1162
4UJD|1|A2|C|1163
4UJD|1|A2|A|1164
4UJD|1|A2|G|1165
4UJD|1|A2|U|1166
4UJD|1|A2|G|1167
4UJD|1|A2|C|1168

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S RIBOSOMAL PROTEIN L5