HL_4UJD_126

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_126 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.1839

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4UJD|1|A2|U|4281
4UJD|1|A2|G|4282
4UJD|1|A2|A|4283
4UJD|1|A2|A|4284
4UJD|1|A2|A|4285
4UJD|1|A2|G|4286

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AT

60S RIBOSOMAL PROTEIN L21