HL_4UJD_128

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

4UJD|1|A3|U|110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_128 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2994

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4UJD|1|A3|C|107
4UJD|1|A3|A|108
4UJD|1|A3|C|109
4UJD|1|A3|U|110
4UJD|1|A3|U|111
4UJD|1|A3|G|112

Current chains

Chain A3

5.8S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain AX

60S RIBOSOMAL PROTEIN L23A

Chain Aj

60S RIBOSOMAL PROTEIN L37

Chain Al

60S RIBOSOMAL PROTEIN L39