HL_4UJD_132

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

ACGAUCAGAUACCGU

Length

15 nucleotides

Bulged bases

4UJD|1|C1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|A|1052
4UJD|1|C1|C|1053
4UJD|1|C1|G|1054
4UJD|1|C1|A|1055
4UJD|1|C1|U|1056
4UJD|1|C1|C|1057
4UJD|1|C1|A|1058
4UJD|1|C1|G|1059
4UJD|1|C1|A|1060
4UJD|1|C1|U|1061
4UJD|1|C1|A|1062
4UJD|1|C1|C|1063
4UJD|1|C1|C|1064
4UJD|1|C1|G|1065
4UJD|1|C1|U|1066

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BA

Transfer RNA; tRNA

Chain BC

Internal ribosome entry site; IRES

Chain CO

40S RIBOSOMAL PROTEIN ES11