HL_4UJD_144
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- 4UJD|1|C1|A|886
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_144 not in the Motif Atlas
- Homologous match to HL_8P9A_236
- Geometric discrepancy: 0.5576
- The information below is about HL_8P9A_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.4
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4UJD|1|C1|U|885
4UJD|1|C1|A|886
4UJD|1|C1|U|887
4UJD|1|C1|U|888
4UJD|1|C1|U|889
4UJD|1|C1|U|890
4UJD|1|C1|G|891
4UJD|1|C1|U|892
4UJD|1|C1|U|893
4UJD|1|C1|G|894
4UJD|1|C1|G|895
4UJD|1|C1|U|896
4UJD|1|C1|U|897
4UJD|1|C1|U|898
4UJD|1|C1|U|899
4UJD|1|C1|C|900
4UJD|1|C1|G|901
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CG
- 40S RIBOSOMAL PROTEIN ES6
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
Coloring options: