HL_4UJE_009

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

4UJE|1|A2|G|306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_009 not in the Motif Atlas

Homologous match to HL_5TBW_009

Geometric discrepancy: 0.2631

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4UJE|1|A2|G|305
4UJE|1|A2|G|306
4UJE|1|A2|U|307
4UJE|1|A2|A|308
4UJE|1|A2|A|309
4UJE|1|A2|A|310
4UJE|1|A2|C|311
4UJE|1|A2|U|312
4UJE|1|A2|C|313
4UJE|1|A2|C|314

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CL

60S RIBOSOMAL PROTEIN L13

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain Ca

60S RIBOSOMAL PROTEIN L27A

Chain Ci

60S RIBOSOMAL PROTEIN L36

Chain Co

60S RIBOSOMAL PROTEIN L36A