4UJE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UJE_001 | No text annotation | ||
| HL_4UJE_002 | No text annotation | ||
| HL_4UJE_003 | No text annotation | ||
| HL_4UJE_004 | No text annotation | ||
| HL_4UJE_005 | No text annotation | ||
| HL_4UJE_118 | T-loop with 1 bulged base | ||
| HL_4UJE_006 | No text annotation | ||
| HL_4UJE_007 | T-loop with unstacked turn | ||
| HL_4UJE_008 | No text annotation | ||
| HL_4UJE_119 | T-loop related | ||
| HL_4UJE_009 | Pseudoknot geometry | ||
| HL_4UJE_010 | GNRA | ||
| HL_4UJE_011 | No text annotation | ||
| HL_4UJE_012 | No text annotation | ||
| HL_4UJE_120 | No text annotation | ||
| HL_4UJE_013 | No text annotation | ||
| HL_4UJE_014 | T-loop with 2 stacked bulged bases | ||
| HL_4UJE_015 | No text annotation | ||
| HL_4UJE_121 | No text annotation | ||
| HL_4UJE_016 | GNRA | ||
| HL_4UJE_017 | No text annotation | ||
| HL_4UJE_018 | No text annotation | ||
| HL_4UJE_019 | No text annotation | ||
| HL_4UJE_132 | No text annotation | ||
| HL_4UJE_020 | No text annotation | ||
| HL_4UJE_021 | No text annotation | ||
| HL_4UJE_022 | No text annotation | ||
| HL_4UJE_023 | Externally structured | ||
| HL_4UJE_024 | No text annotation | ||
| HL_4UJE_025 | No text annotation | ||
| HL_4UJE_026 | GNRA | ||
| HL_4UJE_027 | No text annotation | ||
| HL_4UJE_028 | No text annotation | ||
| HL_4UJE_029 | No text annotation | ||
| HL_4UJE_030 | GNRA | ||
| HL_4UJE_031 | T-loop with 2 stacked bulged bases | ||
| HL_4UJE_032 | No text annotation | ||
| HL_4UJE_133 | Pseudoknot geometry with 3' bulge | ||
| HL_4UJE_033 | GNRA variation | ||
| HL_4UJE_034 | No text annotation | ||
| HL_4UJE_134 | Mini UNCG | ||
| HL_4UJE_035 | No text annotation | ||
| HL_4UJE_036 | No text annotation | ||
| HL_4UJE_037 | GNRA | ||
| HL_4UJE_038 | No text annotation | ||
| HL_4UJE_039 | No text annotation | ||
| HL_4UJE_040 | No text annotation | ||
| HL_4UJE_041 | No text annotation | ||
| HL_4UJE_042 | No text annotation | ||
| HL_4UJE_043 | GNRA | ||
| HL_4UJE_044 | UNCG | ||
| HL_4UJE_045 | No text annotation | ||
| HL_4UJE_046 | No text annotation | ||
| HL_4UJE_047 | No text annotation | ||
| HL_4UJE_048 | GNRA | ||
| HL_4UJE_049 | GNRA | ||
| HL_4UJE_050 | No text annotation | ||
| HL_4UJE_051 | No text annotation | ||
| HL_4UJE_052 | No text annotation | ||
| HL_4UJE_053 | No text annotation | ||
| HL_4UJE_135 | No text annotation | ||
| HL_4UJE_054 | No text annotation | ||
| HL_4UJE_055 | No text annotation | ||
| HL_4UJE_056 | No text annotation | ||
| HL_4UJE_057 | No text annotation | ||
| HL_4UJE_058 | Pseudoknot geometry | ||
| HL_4UJE_059 | No text annotation | ||
| HL_4UJE_060 | GNRA with extra cWW | ||
| HL_4UJE_122 | GNRA | ||
| HL_4UJE_061 | No text annotation | ||
| HL_4UJE_062 | No text annotation | ||
| HL_4UJE_063 | No text annotation | ||
| HL_4UJE_136 | GNRA variation | ||
| HL_4UJE_064 | No text annotation | ||
| HL_4UJE_065 | GNRA | ||
| HL_4UJE_066 | GNRA | ||
| HL_4UJE_067 | Ribsomal LSU H95 | ||
| HL_4UJE_068 | No text annotation | ||
| HL_4UJE_123 | No text annotation | ||
| HL_4UJE_069 | No text annotation | ||
| HL_4UJE_070 | No text annotation | ||
| HL_4UJE_071 | No text annotation | ||
| HL_4UJE_137 | No text annotation | ||
| HL_4UJE_072 | Pseudoknot with intercalation | ||
| HL_4UJE_073 | No text annotation | ||
| HL_4UJE_124 | No text annotation | ||
| HL_4UJE_074 | No text annotation | ||
| HL_4UJE_075 | No text annotation | ||
| HL_4UJE_076 | No text annotation | ||
| HL_4UJE_077 | GNRA | ||
| HL_4UJE_078 | tRNA D-loop | ||
| HL_4UJE_079 | tRNA anticodon loop | ||
| HL_4UJE_080 | T-loop with 2 stacked bulged bases | ||
| HL_4UJE_081 | No text annotation | ||
| HL_4UJE_082 | tRNA anticodon loop | ||
| HL_4UJE_083 | T-loop with 2 stacked bulged bases | ||
| HL_4UJE_084 | No text annotation | ||
| HL_4UJE_085 | No text annotation | ||
| HL_4UJE_086 | GNRA related | ||
| HL_4UJE_087 | No text annotation | ||
| HL_4UJE_125 | No text annotation | ||
| HL_4UJE_088 | No text annotation | ||
| HL_4UJE_089 | T-loop with 2 stacked bulged bases | ||
| HL_4UJE_090 | No text annotation | ||
| HL_4UJE_091 | No text annotation | ||
| HL_4UJE_092 | No text annotation | ||
| HL_4UJE_093 | UNCG | ||
| HL_4UJE_094 | No text annotation | ||
| HL_4UJE_095 | No text annotation | ||
| HL_4UJE_126 | No text annotation | ||
| HL_4UJE_138 | No text annotation | ||
| HL_4UJE_096 | No text annotation | ||
| HL_4UJE_097 | GNRA variation | ||
| HL_4UJE_098 | No text annotation | ||
| HL_4UJE_099 | No text annotation | ||
| HL_4UJE_100 | No text annotation | ||
| HL_4UJE_139 | No text annotation | ||
| HL_4UJE_101 | No text annotation | ||
| HL_4UJE_102 | GNRA | ||
| HL_4UJE_127 | No text annotation | ||
| HL_4UJE_103 | No text annotation | ||
| HL_4UJE_128 | No text annotation | ||
| HL_4UJE_104 | No text annotation | ||
| HL_4UJE_140 | No text annotation | ||
| HL_4UJE_105 | GNRA | ||
| HL_4UJE_106 | GNRA | ||
| HL_4UJE_107 | No text annotation | ||
| HL_4UJE_108 | No text annotation | ||
| HL_4UJE_141 | GNRA wlth extra near cWW | ||
| HL_4UJE_129 | GNRA with extra cWW | ||
| HL_4UJE_109 | GNRA | ||
| HL_4UJE_110 | No text annotation | ||
| HL_4UJE_111 | No text annotation | ||
| HL_4UJE_112 | tRNA anticodon loop | ||
| HL_4UJE_130 | GNRA | ||
| HL_4UJE_113 | GNRA | ||
| HL_4UJE_114 | No text annotation | ||
| HL_4UJE_115 | No text annotation | ||
| HL_4UJE_131 | No text annotation | ||
| HL_4UJE_116 | GNRA | ||
| HL_4UJE_117 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UJE_001 | No text annotation | ||
| IL_4UJE_241 | No text annotation | ||
| IL_4UJE_309 | No text annotation | ||
| IL_4UJE_002 | Other IL | ||
| IL_4UJE_003 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4UJE_242 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJE_005 | No text annotation | ||
| IL_4UJE_243 | No text annotation | ||
| IL_4UJE_310 | No text annotation | ||
| IL_4UJE_006 | Minor groove platform | ||
| IL_4UJE_007 | Isolated non-canonical cWW pair | ||
| IL_4UJE_311 | No text annotation | ||
| IL_4UJE_244 | Isolated non-canonical cWW pair | ||
| IL_4UJE_008 | Single bulged A | ||
| IL_4UJE_009 | No text annotation | ||
| IL_4UJE_245 | No text annotation | ||
| IL_4UJE_010 | Single stack bend | ||
| IL_4UJE_011 | Triple sheared with non-canonical cWW | ||
| IL_4UJE_012 | No text annotation | ||
| IL_4UJE_013 | Isolated non-canonical cWW pair | ||
| IL_4UJE_014 | No text annotation | ||
| IL_4UJE_312 | No text annotation | ||
| IL_4UJE_246 | No text annotation | ||
| IL_4UJE_247 | Isolated non-canonical cWW pair | ||
| IL_4UJE_313 | No text annotation | ||
| IL_4UJE_015 | No text annotation | ||
| IL_4UJE_016 | No text annotation | ||
| IL_4UJE_314 | No text annotation | ||
| IL_4UJE_017 | No text annotation | ||
| IL_4UJE_018 | Isolated non-canonical cWW pair | ||
| IL_4UJE_019 | Isolated non-canonical cWW pair | ||
| IL_4UJE_020 | No text annotation | ||
| IL_4UJE_248 | No text annotation | ||
| IL_4UJE_315 | No text annotation | ||
| IL_4UJE_249 | No text annotation | ||
| IL_4UJE_021 | No text annotation | ||
| IL_4UJE_022 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_023 | No text annotation | ||
| IL_4UJE_024 | Isolated non-canonical cWW pair | ||
| IL_4UJE_250 | No text annotation | ||
| IL_4UJE_025 | No text annotation | ||
| IL_4UJE_026 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_251 | Multiple bulged bases | ||
| IL_4UJE_027 | Multiple bulged bases | ||
| IL_4UJE_028 | No text annotation | ||
| IL_4UJE_029 | No text annotation | ||
| IL_4UJE_252 | Isolated non-canonical cWW pair | ||
| IL_4UJE_030 | Multiple bulged bases | ||
| IL_4UJE_031 | No text annotation | ||
| IL_4UJE_253 | Isolated non-canonical cWW pair | ||
| IL_4UJE_032 | No text annotation | ||
| IL_4UJE_254 | No text annotation | ||
| IL_4UJE_033 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_034 | Isolated non-canonical cWW pair | ||
| IL_4UJE_035 | No text annotation | ||
| IL_4UJE_036 | No text annotation | ||
| IL_4UJE_316 | No text annotation | ||
| IL_4UJE_255 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_037 | No text annotation | ||
| IL_4UJE_038 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_039 | Single bulged A | ||
| IL_4UJE_256 | No text annotation | ||
| IL_4UJE_040 | Minor groove platform | ||
| IL_4UJE_041 | Isolated non-canonical cWW pair | ||
| IL_4UJE_257 | No text annotation | ||
| IL_4UJE_042 | tHW-tHW cross-strand stack | ||
| IL_4UJE_258 | Triple sheared with non-canonical cWW | ||
| IL_4UJE_043 | No text annotation | ||
| IL_4UJE_044 | Major groove platform with extra cWW | ||
| IL_4UJE_045 | Single bulged U | ||
| IL_4UJE_046 | Multiple bulged bases | ||
| IL_4UJE_047 | Isolated non-canonical cWW pair | ||
| IL_4UJE_048 | No text annotation | ||
| IL_4UJE_049 | Multiple bulged bases | ||
| IL_4UJE_050 | Single bulged G | ||
| IL_4UJE_051 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4UJE_259 | No text annotation | ||
| IL_4UJE_052 | Minor groove platform | ||
| IL_4UJE_317 | C-loop with bulged stacked A's | ||
| IL_4UJE_053 | No text annotation | ||
| IL_4UJE_054 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_260 | Isolated non-canonical cWW pair | ||
| IL_4UJE_055 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_056 | No text annotation | ||
| IL_4UJE_261 | No text annotation | ||
| IL_4UJE_057 | No text annotation | ||
| IL_4UJE_058 | Single bulged A | ||
| IL_4UJE_059 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_262 | Isolated non-canonical cWW pair | ||
| IL_4UJE_060 | UAA/GAN | ||
| IL_4UJE_061 | Isolated non-canonical cWW pair | ||
| IL_4UJE_062 | Multiple bulged bases | ||
| IL_4UJE_263 | Partly complementary | ||
| IL_4UJE_063 | No text annotation | ||
| IL_4UJE_064 | No text annotation | ||
| IL_4UJE_065 | Single bulged U | ||
| IL_4UJE_066 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_067 | Isolated cWS basepair | ||
| IL_4UJE_068 | Isolated non-canonical cWW pair | ||
| IL_4UJE_264 | Single bulged A | ||
| IL_4UJE_069 | No text annotation | ||
| IL_4UJE_318 | No text annotation | ||
| IL_4UJE_265 | No text annotation | ||
| IL_4UJE_070 | Single bulged A | ||
| IL_4UJE_071 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_4UJE_072 | Major groove platform; stack outside cWW | ||
| IL_4UJE_266 | No text annotation | ||
| IL_4UJE_073 | C-loop | ||
| IL_4UJE_074 | UAA/GAN | ||
| IL_4UJE_075 | No text annotation | ||
| IL_4UJE_267 | Partly complementary | ||
| IL_4UJE_076 | Isolated cWH basepair | ||
| IL_4UJE_077 | Isolated non-canonical cWW pair | ||
| IL_4UJE_078 | Triple sheared | ||
| IL_4UJE_079 | Single bulged A | ||
| IL_4UJE_080 | Single stack bend | ||
| IL_4UJE_081 | No text annotation | ||
| IL_4UJE_268 | No text annotation | ||
| IL_4UJE_082 | Minor groove platform | ||
| IL_4UJE_269 | No text annotation | ||
| IL_4UJE_319 | No text annotation | ||
| IL_4UJE_083 | No text annotation | ||
| IL_4UJE_084 | No text annotation | ||
| IL_4UJE_085 | Isolated tWW turn | ||
| IL_4UJE_086 | Major groove platform; stack outside cWW | ||
| IL_4UJE_270 | No text annotation | ||
| IL_4UJE_087 | Intercalated tWH | ||
| IL_4UJE_088 | tSH-tSH-tHH-tHS | ||
| IL_4UJE_089 | Isolated non-canonical cWW pair | ||
| IL_4UJE_090 | No text annotation | ||
| IL_4UJE_091 | Single bulged A | ||
| IL_4UJE_092 | Kink-turn related | ||
| IL_4UJE_093 | Major groove intercalation | ||
| IL_4UJE_094 | Multiple bulged bases | ||
| IL_4UJE_095 | No text annotation | ||
| IL_4UJE_096 | No text annotation | ||
| IL_4UJE_097 | No text annotation | ||
| IL_4UJE_098 | Single stack bend | ||
| IL_4UJE_099 | Bulged stacked bases | ||
| IL_4UJE_100 | No text annotation | ||
| IL_4UJE_101 | No text annotation | ||
| IL_4UJE_102 | Major groove platform with intercalation | ||
| IL_4UJE_271 | Single bulged U | ||
| IL_4UJE_103 | Isolated non-canonical cWW pair | ||
| IL_4UJE_104 | Minor groove platform | ||
| IL_4UJE_105 | No text annotation | ||
| IL_4UJE_272 | No text annotation | ||
| IL_4UJE_106 | No text annotation | ||
| IL_4UJE_320 | No text annotation | ||
| IL_4UJE_273 | No text annotation | ||
| IL_4UJE_107 | Isolated non-canonical cWW pair | ||
| IL_4UJE_108 | No text annotation | ||
| IL_4UJE_274 | No text annotation | ||
| IL_4UJE_275 | No text annotation | ||
| IL_4UJE_109 | No text annotation | ||
| IL_4UJE_110 | No text annotation | ||
| IL_4UJE_111 | Single bulged A | ||
| IL_4UJE_112 | Isolated tHS basepair with bulges | ||
| IL_4UJE_113 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_114 | Single stack bend | ||
| IL_4UJE_115 | Major groove platform | ||
| IL_4UJE_116 | Isolated non-canonical cWW pair | ||
| IL_4UJE_117 | Major groove platform | ||
| IL_4UJE_118 | Major groove minor groove platform with extra cWW | ||
| IL_4UJE_119 | No text annotation | ||
| IL_4UJE_120 | Major groove platform | ||
| IL_4UJE_121 | Isolated non-canonical cWW with bulges | ||
| IL_4UJE_276 | No text annotation | ||
| IL_4UJE_122 | No text annotation | ||
| IL_4UJE_123 | Isolated non-canonical cWW pair | ||
| IL_4UJE_124 | No text annotation | ||
| IL_4UJE_125 | Isolated cWH basepair | ||
| IL_4UJE_277 | Single bulged A | ||
| IL_4UJE_126 | No text annotation | ||
| IL_4UJE_278 | No text annotation | ||
| IL_4UJE_127 | No text annotation | ||
| IL_4UJE_128 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJE_129 | No text annotation | ||
| IL_4UJE_321 | No text annotation | ||
| IL_4UJE_279 | No text annotation | ||
| IL_4UJE_130 | UAA/GAN related | ||
| IL_4UJE_131 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_280 | No text annotation | ||
| IL_4UJE_132 | Isolated cWS basepair | ||
| IL_4UJE_133 | UAA/GAN with extra cWW | ||
| IL_4UJE_281 | UAA/GAN | ||
| IL_4UJE_134 | No text annotation | ||
| IL_4UJE_282 | Minor groove platform | ||
| IL_4UJE_135 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_283 | No text annotation | ||
| IL_4UJE_284 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_136 | Isolated non-canonical cWW pair | ||
| IL_4UJE_322 | No text annotation | ||
| IL_4UJE_137 | No text annotation | ||
| IL_4UJE_138 | No text annotation | ||
| IL_4UJE_139 | Isolated non-canonical cWW pair | ||
| IL_4UJE_285 | Multiple bulged bases | ||
| IL_4UJE_286 | No text annotation | ||
| IL_4UJE_140 | No text annotation | ||
| IL_4UJE_141 | No text annotation | ||
| IL_4UJE_142 | Minor groove platform | ||
| IL_4UJE_143 | Single bulged G | ||
| IL_4UJE_144 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_145 | No text annotation | ||
| IL_4UJE_146 | Single bulged U | ||
| IL_4UJE_287 | No text annotation | ||
| IL_4UJE_147 | No text annotation | ||
| IL_4UJE_148 | No text annotation | ||
| IL_4UJE_149 | Single bulged C | ||
| IL_4UJE_150 | Double sheared; A in syn | ||
| IL_4UJE_288 | Isolated non-canonical cWW with bulges | ||
| IL_4UJE_151 | No text annotation | ||
| IL_4UJE_152 | Single bulged U | ||
| IL_4UJE_153 | Single stack bend with SAM intercalation | ||
| IL_4UJE_154 | Multiple bulged bases | ||
| IL_4UJE_155 | Minor groove platform related | ||
| IL_4UJE_289 | No text annotation | ||
| IL_4UJE_156 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4UJE_157 | Isolated cWH basepair | ||
| IL_4UJE_158 | Isolated non-canonical cWW pair | ||
| IL_4UJE_323 | Isolated non-canonical cWW pair | ||
| IL_4UJE_159 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_160 | Isolated non-canonical cWW pair | ||
| IL_4UJE_290 | No text annotation | ||
| IL_4UJE_161 | Triple sheared related | ||
| IL_4UJE_162 | No text annotation | ||
| IL_4UJE_163 | Minor groove platform | ||
| IL_4UJE_324 | No text annotation | ||
| IL_4UJE_164 | No text annotation | ||
| IL_4UJE_165 | No text annotation | ||
| IL_4UJE_166 | Multiple bulged bases | ||
| IL_4UJE_167 | No text annotation | ||
| IL_4UJE_291 | No text annotation | ||
| IL_4UJE_168 | No text annotation | ||
| IL_4UJE_169 | Isolated non-canonical cWW contact | ||
| IL_4UJE_170 | No text annotation | ||
| IL_4UJE_292 | No text annotation | ||
| IL_4UJE_171 | No text annotation | ||
| IL_4UJE_293 | No text annotation | ||
| IL_4UJE_172 | Kink-turn with non-sequential stacking | ||
| IL_4UJE_173 | No text annotation | ||
| IL_4UJE_174 | No text annotation | ||
| IL_4UJE_175 | Isolated cWH basepair | ||
| IL_4UJE_176 | Isolated near basepair | ||
| IL_4UJE_177 | Single bulged U | ||
| IL_4UJE_178 | C-loop | ||
| IL_4UJE_179 | Single bulged G | ||
| IL_4UJE_180 | Single bulged A | ||
| IL_4UJE_325 | No text annotation | ||
| IL_4UJE_181 | No text annotation | ||
| IL_4UJE_182 | No text annotation | ||
| IL_4UJE_183 | Isolated non-canonical cWW pair | ||
| IL_4UJE_184 | Kink-turn related | ||
| IL_4UJE_185 | Isolated cWH basepair | ||
| IL_4UJE_186 | Isolated non-canonical cWW pair | ||
| IL_4UJE_187 | tSH-tHW-tHS | ||
| IL_4UJE_188 | Multiple bulged bases | ||
| IL_4UJE_189 | No text annotation | ||
| IL_4UJE_190 | Major groove minor groove platform; mini C-loop | ||
| IL_4UJE_191 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_192 | No text annotation | ||
| IL_4UJE_193 | Isolated cWH basepair | ||
| IL_4UJE_194 | Major groove platform; stack outside cWW | ||
| IL_4UJE_294 | Isolated non-canonical cWW pair | ||
| IL_4UJE_326 | No text annotation | ||
| IL_4UJE_195 | Isolated non-canonical cWW pair | ||
| IL_4UJE_196 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_197 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_198 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_199 | Kink-turn related | ||
| IL_4UJE_327 | Kink-turn | ||
| IL_4UJE_200 | Other IL | ||
| IL_4UJE_201 | tSH-tHW-tHS | ||
| IL_4UJE_202 | No text annotation | ||
| IL_4UJE_203 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_204 | Isolated non-canonical cWW contact | ||
| IL_4UJE_205 | Single bulged U | ||
| IL_4UJE_206 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4UJE_295 | No text annotation | ||
| IL_4UJE_207 | No text annotation | ||
| IL_4UJE_328 | Single bulged G | ||
| IL_4UJE_208 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_296 | No text annotation | ||
| IL_4UJE_209 | No text annotation | ||
| IL_4UJE_297 | No text annotation | ||
| IL_4UJE_210 | Isolated non-canonical cWW pair | ||
| IL_4UJE_211 | Minor groove platform | ||
| IL_4UJE_212 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_298 | Isolated non-canonical cWW pair | ||
| IL_4UJE_299 | No text annotation | ||
| IL_4UJE_329 | No text annotation | ||
| IL_4UJE_213 | No text annotation | ||
| IL_4UJE_300 | No text annotation | ||
| IL_4UJE_214 | No text annotation | ||
| IL_4UJE_215 | Single bulged U | ||
| IL_4UJE_216 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_301 | Multiple bulged bases | ||
| IL_4UJE_217 | Minor groove platform with extra cWW | ||
| IL_4UJE_218 | Single bulged A | ||
| IL_4UJE_219 | Isolated cWH basepair | ||
| IL_4UJE_220 | Isolated non-canonical cWW contact | ||
| IL_4UJE_221 | No text annotation | ||
| IL_4UJE_302 | No text annotation | ||
| IL_4UJE_222 | No text annotation | ||
| IL_4UJE_223 | No text annotation | ||
| IL_4UJE_303 | No text annotation | ||
| IL_4UJE_224 | No text annotation | ||
| IL_4UJE_225 | Isolated non-canonical cWW pair | ||
| IL_4UJE_304 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_305 | No text annotation | ||
| IL_4UJE_226 | No text annotation | ||
| IL_4UJE_227 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_330 | Isolated non-canonical cWW pair | ||
| IL_4UJE_228 | No text annotation | ||
| IL_4UJE_229 | No text annotation | ||
| IL_4UJE_230 | No text annotation | ||
| IL_4UJE_231 | Isolated non-canonical cWW pair | ||
| IL_4UJE_232 | Non canonical cWW and near pair | ||
| IL_4UJE_233 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_306 | Isolated non-canonical cWW pair | ||
| IL_4UJE_234 | Double sheared | ||
| IL_4UJE_235 | No text annotation | ||
| IL_4UJE_236 | Isolated non-canonical cWW pair | ||
| IL_4UJE_237 | Double sheared | ||
| IL_4UJE_238 | Tandem non-canonical cWW pairs | ||
| IL_4UJE_307 | Triple sheared | ||
| IL_4UJE_239 | No text annotation | ||
| IL_4UJE_308 | Partly complementary | ||
| IL_4UJE_240 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UJE_020 | 1/B1/938:941, 1/B1/985:993, 1/B1/1000:1004 | No text annotation | homologous J3_4V88_033 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UJE_027 | No text annotation | ||
| J3_4UJE_001 | No text annotation | ||
| J3_4UJE_049 | No text annotation | ||
| J3_4UJE_028 | No text annotation | ||
| J3_4UJE_050 | No text annotation | ||
| J3_4UJE_029 | No text annotation | ||
| J3_4UJE_051 | No text annotation | ||
| J3_4UJE_030 | No text annotation | ||
| J3_4UJE_031 | No text annotation | ||
| J3_4UJE_052 | No text annotation | ||
| J3_4UJE_032 | No text annotation | ||
| J3_4UJE_002 | No text annotation | ||
| J3_4UJE_003 | No text annotation | ||
| J3_4UJE_033 | No text annotation | ||
| J3_4UJE_053 | No text annotation | ||
| J3_4UJE_004 | No text annotation | ||
| J3_4UJE_054 | No text annotation | ||
| J3_4UJE_034 | No text annotation | ||
| J3_4UJE_005 | No text annotation | ||
| J3_4UJE_006 | No text annotation | ||
| J3_4UJE_055 | No text annotation | ||
| J3_4UJE_035 | No text annotation | ||
| J3_4UJE_007 | No text annotation | ||
| J3_4UJE_008 | No text annotation | ||
| J3_4UJE_036 | No text annotation | ||
| J3_4UJE_056 | No text annotation | ||
| J3_4UJE_037 | No text annotation | ||
| J3_4UJE_057 | No text annotation | ||
| J3_4UJE_038 | No text annotation | ||
| J3_4UJE_009 | No text annotation | ||
| J3_4UJE_010 | No text annotation | ||
| J3_4UJE_039 | No text annotation | ||
| J3_4UJE_058 | No text annotation | ||
| J3_4UJE_011 | No text annotation | ||
| J3_4UJE_040 | No text annotation | ||
| J3_4UJE_041 | No text annotation | ||
| J3_4UJE_012 | No text annotation | ||
| J3_4UJE_042 | No text annotation | ||
| J3_4UJE_013 | No text annotation | ||
| J3_4UJE_043 | No text annotation | ||
| J3_4UJE_014 | No text annotation | ||
| J3_4UJE_044 | No text annotation | ||
| J3_4UJE_015 | No text annotation | ||
| J3_4UJE_016 | No text annotation | ||
| J3_4UJE_017 | No text annotation | ||
| J3_4UJE_018 | No text annotation | ||
| J3_4UJE_019 | No text annotation | ||
| J3_4UJE_045 | No text annotation | ||
| J3_4UJE_046 | No text annotation | ||
| J3_4UJE_021 | No text annotation | ||
| J3_4UJE_022 | No text annotation | ||
| J3_4UJE_023 | No text annotation | ||
| J3_4UJE_024 | No text annotation | ||
| J3_4UJE_025 | No text annotation | ||
| J3_4UJE_047 | No text annotation | ||
| J3_4UJE_026 | No text annotation | ||
| J3_4UJE_048 | No text annotation | ||
| J4_4UJE_001 | No text annotation | ||
| J4_4UJE_015 | No text annotation | ||
| J4_4UJE_002 | No text annotation | ||
| J4_4UJE_003 | No text annotation | ||
| J4_4UJE_004 | No text annotation | ||
| J4_4UJE_016 | No text annotation | ||
| J4_4UJE_005 | No text annotation | ||
| J4_4UJE_006 | No text annotation | ||
| J4_4UJE_007 | No text annotation | ||
| J4_4UJE_008 | No text annotation | ||
| J4_4UJE_009 | No text annotation | ||
| J4_4UJE_010 | tRNA junction | ||
| J4_4UJE_011 | tRNA junction | ||
| J4_4UJE_012 | No text annotation | ||
| J4_4UJE_013 | No text annotation | ||
| J4_4UJE_014 | No text annotation | ||
| J5_4UJE_001 | No text annotation | ||
| J5_4UJE_002 | No text annotation | ||
| J5_4UJE_003 | No text annotation | ||
| J5_4UJE_008 | No text annotation | ||
| J5_4UJE_004 | No text annotation | ||
| J5_4UJE_005 | No text annotation | ||
| J5_4UJE_006 | No text annotation | ||
| J5_4UJE_009 | No text annotation | ||
| J5_4UJE_007 | No text annotation | ||
| J6_4UJE_005 | No text annotation | ||
| J6_4UJE_001 | No text annotation | ||
| J6_4UJE_006 | No text annotation | ||
| J6_4UJE_002 | No text annotation | ||
| J6_4UJE_007 | No text annotation | ||
| J6_4UJE_003 | No text annotation | ||
| J6_4UJE_008 | No text annotation | ||
| J6_4UJE_004 | No text annotation | ||
| J7_4UJE_001 | No text annotation | ||
| J9_4UJE_002 | No text annotation | ||
| J9_4UJE_001 | No text annotation |
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