HL_4UJE_019

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGCCGCGCCG

Length

10 nucleotides

Bulged bases

4UJE|1|A2|C|1462

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_019 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2644

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4UJE|1|A2|C|1457
4UJE|1|A2|G|1458
4UJE|1|A2|C|1459
4UJE|1|A2|C|1460
4UJE|1|A2|G|1461
4UJE|1|A2|C|1462
4UJE|1|A2|G|1463
4UJE|1|A2|C|1464
4UJE|1|A2|C|1465
4UJE|1|A2|G|1466

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CL

60S RIBOSOMAL PROTEIN L13

Chain Ca

60S RIBOSOMAL PROTEIN L27A