HL_4UJE_020

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4UJE|1|A2|A|1542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_020 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2829

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4UJE|1|A2|G|1540
4UJE|1|A2|G|1541
4UJE|1|A2|A|1542
4UJE|1|A2|A|1543
4UJE|1|A2|A|1544
4UJE|1|A2|C|1545

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BL

40S RIBOSOMAL PROTEIN S11

Chain BN

40S RIBOSOMAL PROTEIN S13