HL_4UJE_049

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_049 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.2469

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJE|1|A2|A|3693
4UJE|1|A2|G|3694
4UJE|1|A2|A|3695
4UJE|1|A2|A|3696
4UJE|1|A2|A|3697
4UJE|1|A2|U|3698

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain Ci

60S RIBOSOMAL PROTEIN L36

Chain Co

60S RIBOSOMAL PROTEIN L36A

Chain Cu

60S RIBOSOMAL PROTEIN L10A