HL_4UJE_065

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_065 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.1785

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJE|1|A2|C|4500
4UJE|1|A2|G|4501
4UJE|1|A2|U|4502
4UJE|1|A2|G|4503
4UJE|1|A2|A|4504
4UJE|1|A2|G|4505

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain CA

60S RIBOSOMAL PROTEIN L8