HL_4UJE_070

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

4UJE|1|A2|U|4931

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_070 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1324

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4UJE|1|A2|G|4930
4UJE|1|A2|U|4931
4UJE|1|A2|A|4932
4UJE|1|A2|G|4933
4UJE|1|A2|A|4934
4UJE|1|A2|C|4935
4UJE|1|A2|G|4936
4UJE|1|A2|A|4937
4UJE|1|A2|C|4938

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain CP

60S RIBOSOMAL PROTEIN L17

Chain Cd

60S RIBOSOMAL PROTEIN L31