HL_4UJE_080
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJE_080 not in the Motif Atlas
- Homologous match to HL_4LCK_003
- Geometric discrepancy: 0.1061
- The information below is about HL_4LCK_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4UJE|1|AV|G|53
4UJE|1|AV|U|54
4UJE|1|AV|U|55
4UJE|1|AV|C|56
4UJE|1|AV|G|57
4UJE|1|AV|A|58
4UJE|1|AV|U|59
4UJE|1|AV|U|60
4UJE|1|AV|C|61
Current chains
- Chain AV
- TRNA-LYS
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S RIBOSOMAL PROTEIN L10
- Chain CJ
- 60S RIBOSOMAL PROTEIN L11
- Chain Co
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: