HL_4UJE_088

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAGAUCAAAACCAACCCGUAG

Length

21 nucleotides

Bulged bases

4UJE|1|B1|G|225, 4UJE|1|B1|C|228

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|B1|C|223
4UJE|1|B1|A|224
4UJE|1|B1|G|225
4UJE|1|B1|A|226
4UJE|1|B1|U|227
4UJE|1|B1|C|228
4UJE|1|B1|A|229
4UJE|1|B1|A|230
4UJE|1|B1|A|231
4UJE|1|B1|A|232
4UJE|1|B1|C|233
4UJE|1|B1|C|234
4UJE|1|B1|A|235
4UJE|1|B1|A|236
4UJE|1|B1|C|237
4UJE|1|B1|C|238
4UJE|1|B1|C|239
4UJE|1|B1|G|240
4UJE|1|B1|U|296
4UJE|1|B1|A|297
4UJE|1|B1|G|298

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BG

40S RIBOSOMAL PROTEIN S6

Chain BI

40S RIBOSOMAL PROTEIN S8

Chain BL

40S RIBOSOMAL PROTEIN S11