HL_4UJE_089

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

4UJE|1|B1|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_089 not in the Motif Atlas

Geometric match to HL_5TBW_005

Geometric discrepancy: 0.2056

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJE|1|B1|C|322
4UJE|1|B1|C|323
4UJE|1|B1|C|324
4UJE|1|B1|C|325
4UJE|1|B1|C|326
4UJE|1|B1|G|327
4UJE|1|B1|U|328
4UJE|1|B1|G|329

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BG

40S RIBOSOMAL PROTEIN S6