HL_4UJE_093

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4UJE|1|B1|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_093 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.3859

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4UJE|1|B1|C|462
4UJE|1|B1|C|463
4UJE|1|B1|A|464
4UJE|1|B1|A|465
4UJE|1|B1|G|466
4UJE|1|B1|G|467

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BG

40S RIBOSOMAL PROTEIN S6

Chain CV

60S RIBOSOMAL PROTEIN L23