HL_4UJE_115

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

4UJE|1|B1|G|1665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_115 not in the Motif Atlas

Homologous match to HL_4V88_220

Geometric discrepancy: 0.3242

The information below is about HL_4V88_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4UJE|1|B1|G|1658
4UJE|1|B1|U|1659
4UJE|1|B1|C|1660
4UJE|1|B1|A|1661
4UJE|1|B1|U|1662
4UJE|1|B1|A|1663
4UJE|1|B1|A|1664
4UJE|1|B1|G|1665
4UJE|1|B1|C|1666

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BQ

40S RIBOSOMAL PROTEIN S16

Chain BS

40S RIBOSOMAL PROTEIN S18

Chain BT

40S RIBOSOMAL PROTEIN S19

Chain BU

40S RIBOSOMAL PROTEIN S20

Chain Bd

40S RIBOSOMAL PROTEIN S29