HL_4UY8_074
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UY8_074 not in the Motif Atlas
- Homologous match to HL_3ZGZ_003
- Geometric discrepancy: 0.2309
- The information below is about HL_3ZGZ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4UY8|1|V|G|53
4UY8|1|V|5MU|54
4UY8|1|V|U|55
4UY8|1|V|C|56
4UY8|1|V|A|57
4UY8|1|V|A|58
4UY8|1|V|A|59
4UY8|1|V|U|60
4UY8|1|V|C|61
Current chains
- Chain V
- RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S RIBOSOMAL PROTEIN L5
- Chain M
- 50S RIBOSOMAL PROTEIN L16
Coloring options: