4UY8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4UY8_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_4UY8_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_4UY8_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_4UY8_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_4UY8_014 | 1/A/462:467 | GNRA | homologous HL_7A0S_015 HL_34789.1 | |
| HL_4UY8_015 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_4UY8_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_4UY8_022 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_4UY8_023 | 1/A/779:785 | UNCG variation | homologous HL_7A0S_023 HL_51020.1 | |
| HL_4UY8_024 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_4UY8_026 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_4UY8_027 | 1/A/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_4UY8_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_4UY8_033 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_4UY8_034 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4UY8_035 | 1/A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4UY8_039 | 1/A/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4UY8_040 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_4UY8_042 | 1/A/1691:1696 | UNCG | geometric HL_5J7L_175 NA | |
| HL_4UY8_045 | 1/A/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_4UY8_046 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_4UY8_049 | 1/A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4UY8_050 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_4UY8_053 | 1/A/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_4UY8_054 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_4UY8_057 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_4UY8_062 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4UY8_063 | 1/A/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_4UY8_066 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_4UY8_068 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_4UY8_071 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UY8_001 | No text annotation | ||
| HL_4UY8_004 | No text annotation | ||
| HL_4UY8_005 | No text annotation | ||
| HL_4UY8_007 | No text annotation | ||
| HL_4UY8_008 | No text annotation | ||
| HL_4UY8_010 | No text annotation | ||
| HL_4UY8_011 | T-loop with unstacked turn | ||
| HL_4UY8_012 | No text annotation | ||
| HL_4UY8_013 | Pseudoknot geometry | ||
| HL_4UY8_016 | No text annotation | ||
| HL_4UY8_018 | No text annotation | ||
| HL_4UY8_019 | GNRA | ||
| HL_4UY8_020 | No text annotation | ||
| HL_4UY8_021 | GNRA wlth tandem sheared | ||
| HL_4UY8_025 | No text annotation | ||
| HL_4UY8_078 | No text annotation | ||
| HL_4UY8_028 | No text annotation | ||
| HL_4UY8_029 | GNRA wlth tandem sheared | ||
| HL_4UY8_030 | No text annotation | ||
| HL_4UY8_031 | GNRA | ||
| HL_4UY8_036 | Mini UNCG with extended bulge | ||
| HL_4UY8_037 | Pseudoknot geometry with 3' bulge | ||
| HL_4UY8_038 | Externally structured | ||
| HL_4UY8_041 | GNRA | ||
| HL_4UY8_043 | No text annotation | ||
| HL_4UY8_044 | No text annotation | ||
| HL_4UY8_047 | GNRA variation | ||
| HL_4UY8_048 | No text annotation | ||
| HL_4UY8_051 | No text annotation | ||
| HL_4UY8_079 | No text annotation | ||
| HL_4UY8_052 | No text annotation | ||
| HL_4UY8_055 | No text annotation | ||
| HL_4UY8_080 | No text annotation | ||
| HL_4UY8_056 | Pseudoknot geometry | ||
| HL_4UY8_058 | GNRA | ||
| HL_4UY8_059 | No text annotation | ||
| HL_4UY8_060 | No text annotation | ||
| HL_4UY8_061 | GNRA variation | ||
| HL_4UY8_064 | GNRA | ||
| HL_4UY8_065 | Ribsomal LSU H95 | ||
| HL_4UY8_075 | UNCG variation | ||
| HL_4UY8_067 | Mini UNCG | ||
| HL_4UY8_069 | GNRA | ||
| HL_4UY8_076 | No text annotation | ||
| HL_4UY8_070 | No text annotation | ||
| HL_4UY8_072 | No text annotation | ||
| HL_4UY8_077 | No text annotation | ||
| HL_4UY8_073 | tRNA anticodon loop | ||
| HL_4UY8_074 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UY8_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_4UY8_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_4UY8_007 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_4UY8_008 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_4UY8_009 | 1/A/269:271, 1/A/366:370 | No text annotation | geometric IL_5J7L_252 NA | |
| IL_4UY8_013 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_4UY8_014 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_4UY8_015 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_4UY8_017 | 1/A/672:674, 1/A/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4UY8_018 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
| IL_4UY8_019 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.1 | |
| IL_4UY8_020 | 1/A/702:703, 1/A/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_4UY8_021 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_5J7L_263 NA | |
| IL_4UY8_022 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_4UY8_023 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4UY8_024 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_4WF9_028 IL_15011.1 | |
| IL_4UY8_025 | 1/A/844:847, 1/A/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_4UY8_121 | 1/A/844:848, 1/A/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_4UY8_028 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 NA | |
| IL_4UY8_029 | 1/A/862:863, 1/A/913:915 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_4UY8_030 | 1/A/864:868, 1/A/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_4UY8_031 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_4UY8_034 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_4UY8_035 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_4UY8_036 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_11411.1 | |
| IL_4UY8_037 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_4UY8_038 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_4UY8_039 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_4UY8_046 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 NA | |
| IL_4UY8_047 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_4UY8_048 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_4UY8_049 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_4UY8_050 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4UY8_051 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_4UY8_052 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_4UY8_053 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_4UY8_059 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_4UY8_064 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_4UY8_066 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4UY8_122 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_4UY8_067 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_4UY8_068 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_4UY8_073 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_4UY8_074 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_4UY8_075 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_4UY8_076 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_4UY8_124 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_4UY8_079 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_4UY8_080 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4UY8_083 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_4UY8_084 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_97561.1 | |
| IL_4UY8_085 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_4UY8_086 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_4UY8_087 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4UY8_091 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_4UY8_092 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4UY8_093 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | geometric IL_7A0S_085 IL_48076.7 | |
| IL_4UY8_094 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 NA | |
| IL_4UY8_095 | 1/A/2466:2470, 1/A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_4UY8_096 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_4UY8_097 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_4UY8_098 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_4UY8_099 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_4UY8_101 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4UY8_102 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_4UY8_105 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_4UY8_107 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4UY8_109 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_4UY8_117 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UY8_002 | Single bulged A | ||
| IL_4UY8_003 | Minor groove platform | ||
| IL_4UY8_005 | No text annotation | ||
| IL_4UY8_006 | Single stack bend | ||
| IL_4UY8_010 | Isolated non-canonical cWW pair | ||
| IL_4UY8_011 | No text annotation | ||
| IL_4UY8_012 | No text annotation | ||
| IL_4UY8_016 | AAA cross-strand stack | ||
| IL_4UY8_026 | Stack outside cWW | ||
| IL_4UY8_027 | Single stack bend | ||
| IL_4UY8_032 | Double sheared with non-canonical cWW | ||
| IL_4UY8_033 | Isolated non-canonical cWW pair | ||
| IL_4UY8_040 | Isolated non-canonical cWW pair | ||
| IL_4UY8_041 | Tandem non-canonical cWW pairs | ||
| IL_4UY8_042 | Kink-turn | ||
| IL_4UY8_043 | No text annotation | ||
| IL_4UY8_044 | No text annotation | ||
| IL_4UY8_045 | No text annotation | ||
| IL_4UY8_054 | No text annotation | ||
| IL_4UY8_055 | UAA/GAN | ||
| IL_4UY8_056 | Tandem non-canonical cWW pairs | ||
| IL_4UY8_057 | tSH-tHW | ||
| IL_4UY8_058 | Single bulged U | ||
| IL_4UY8_060 | No text annotation | ||
| IL_4UY8_061 | 180 degree turn | ||
| IL_4UY8_062 | Single bulged A | ||
| IL_4UY8_063 | UAA/GAN variation | ||
| IL_4UY8_065 | Isolated tWW turn | ||
| IL_4UY8_069 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4UY8_070 | Triple sheared | ||
| IL_4UY8_071 | Isolated cWH basepair | ||
| IL_4UY8_123 | Isolated non-canonical cWW pair | ||
| IL_4UY8_072 | Single bulged C | ||
| IL_4UY8_077 | Minor groove platform | ||
| IL_4UY8_078 | UAA/GAN related | ||
| IL_4UY8_081 | Major groove platform | ||
| IL_4UY8_082 | Isolated non-canonical cWW pair | ||
| IL_4UY8_088 | Single bulged U | ||
| IL_4UY8_089 | Double sheared | ||
| IL_4UY8_090 | Single bulged U | ||
| IL_4UY8_100 | Isolated non-canonical cWW pair | ||
| IL_4UY8_103 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4UY8_104 | C-loop | ||
| IL_4UY8_106 | Multiple bulged bases | ||
| IL_4UY8_108 | Single bulged A | ||
| IL_4UY8_110 | Major groove intercalation | ||
| IL_4UY8_111 | Multiple bulged bases with non-canonical cWW | ||
| IL_4UY8_112 | tHS double platform | ||
| IL_4UY8_113 | Major groove intercalation | ||
| IL_4UY8_114 | No text annotation | ||
| IL_4UY8_115 | Major groove minor groove platform; mini C-loop | ||
| IL_4UY8_116 | Symmetric double minor groove platform | ||
| IL_4UY8_118 | No text annotation | ||
| IL_4UY8_119 | Self complementary | ||
| IL_4UY8_120 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UY8_011 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_4UY8_015 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_4UY8_016 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_4UY8_012 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_4UY8_001 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_4UY8_002 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_4UY8_004 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_4UY8_005 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_4UY8_013 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_4UY8_019 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_4UY8_006 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_4UY8_020 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_4UY8_008 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J4_4UY8_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_4UY8_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_4UY8_005 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_4UY8_006 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_4UY8_008 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4UY8_009 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4UY8_011 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_4UY8_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_4UY8_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_4UY8_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_4UY8_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_4UY8_005 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2506, 1/A/2583:2588, 1/A/2606:2611 | No text annotation | ||
| J5_4UY8_006 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_4UY8_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_4UY8_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_4UY8_002 | 1/A/817:822, 1/A/835:837, 1/A/942:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UY8_017 | No text annotation | ||
| J3_4UY8_018 | No text annotation | ||
| J3_4UY8_003 | No text annotation | ||
| J3_4UY8_007 | No text annotation | ||
| J3_4UY8_014 | No text annotation | ||
| J3_4UY8_009 | No text annotation | ||
| J3_4UY8_010 | No text annotation | ||
| J4_4UY8_002 | No text annotation | ||
| J4_4UY8_003 | No text annotation | ||
| J4_4UY8_007 | No text annotation | ||
| J4_4UY8_010 | No text annotation | ||
| J4_4UY8_012 | tRNA junction | ||
| J6_4UY8_001 | No text annotation |
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