HL_4V42_005
3D structure
- PDB id
- 4V42 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the ribosome at 5.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 4V42|1|AC|A|38
- QA status
- Modified nucleotides: OMC, OMG, YG, PSU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V42_005 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.34
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V42|1|AC|A|29
4V42|1|AC|G|30
4V42|1|AC|A|31
4V42|1|AC|OMC|32
4V42|1|AC|U|33
4V42|1|AC|OMG|34
4V42|1|AC|A|35
4V42|1|AC|A|36
4V42|1|AC|YG|37
4V42|1|AC|A|38
4V42|1|AC|PSU|39
4V42|1|AC|5MC|40
4V42|1|AC|U|41
Current chains
- Chain AC
- TRNA(PHE)
Nearby chains
- Chain A1
- A- AND P-SITE MESSENGER RNA CODONS
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- TRNA(PHE)
- Chain AL
- 30S RIBOSOMAL PROTEIN S9
- Chain AP
- 30S RIBOSOMAL PROTEIN S13
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