HL_4V42_006

3D structure

PDB id

4V42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome at 5.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU, 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V42_006 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1736

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V42|1|AC|G|53
4V42|1|AC|5MU|54
4V42|1|AC|PSU|55
4V42|1|AC|C|56
4V42|1|AC|G|57
4V42|1|AC|1MA|58
4V42|1|AC|U|59
4V42|1|AC|C|60
4V42|1|AC|C|61

Current chains

Chain AC

TRNA(PHE)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5