HL_4V49_012

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

ACUCAUACU

Length

9 nucleotides

Bulged bases

4V49|1|AA|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2889

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V49|1|AA|A|462
4V49|1|AA|C|463
4V49|1|AA|U|464
4V49|1|AA|C|465
4V49|1|AA|A|466
4V49|1|AA|U|467
4V49|1|AA|A|468
4V49|1|AA|C|469
4V49|1|AA|U|470

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AP

30S ribosomal protein S16