4V49 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V49_001 | No text annotation | ||
| HL_4V49_002 | No text annotation | ||
| HL_4V49_003 | GNRA | ||
| HL_4V49_004 | GNRA | ||
| HL_4V49_005 | UNCG | ||
| HL_4V49_006 | GNRA related | ||
| HL_4V49_007 | GNRA | ||
| HL_4V49_008 | No text annotation | ||
| HL_4V49_009 | UNCG | ||
| HL_4V49_010 | GNRA | ||
| HL_4V49_011 | UNCG | ||
| HL_4V49_012 | GNRA related | ||
| HL_4V49_013 | Mini UNCG | ||
| HL_4V49_014 | No text annotation | ||
| HL_4V49_015 | No text annotation | ||
| HL_4V49_016 | GNRA | ||
| HL_4V49_017 | No text annotation | ||
| HL_4V49_018 | No text annotation | ||
| HL_4V49_019 | GNRA | ||
| HL_4V49_020 | GNRA | ||
| HL_4V49_021 | No text annotation | ||
| HL_4V49_022 | GNRA | ||
| HL_4V49_023 | UNCG | ||
| HL_4V49_024 | GNRA | ||
| HL_4V49_025 | T-loop related | ||
| HL_4V49_026 | No text annotation | ||
| HL_4V49_027 | GNRA | ||
| HL_4V49_028 | GNRA | ||
| HL_4V49_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V49_030 | No text annotation | ||
| HL_4V49_031 | UNCG | ||
| HL_4V49_032 | GNRA | ||
| HL_4V49_033 | No text annotation | ||
| HL_4V49_034 | tRNA anticodon loop | ||
| HL_4V49_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V49_036 | No text annotation | ||
| HL_4V49_037 | tRNA anticodon loop | ||
| HL_4V49_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V49_039 | No text annotation | ||
| HL_4V49_114 | No text annotation | ||
| HL_4V49_040 | No text annotation | ||
| HL_4V49_041 | No text annotation | ||
| HL_4V49_042 | No text annotation | ||
| HL_4V49_043 | No text annotation | ||
| HL_4V49_044 | No text annotation | ||
| HL_4V49_045 | No text annotation | ||
| HL_4V49_046 | No text annotation | ||
| HL_4V49_047 | T-loop with 1 bulged base | ||
| HL_4V49_048 | No text annotation | ||
| HL_4V49_049 | T-loop with unstacked turn | ||
| HL_4V49_050 | No text annotation | ||
| HL_4V49_115 | No text annotation | ||
| HL_4V49_051 | Pseudoknot geometry | ||
| HL_4V49_052 | GNRA | ||
| HL_4V49_053 | GNRA | ||
| HL_4V49_054 | No text annotation | ||
| HL_4V49_055 | T-loop with 2 bulged bases not stacked | ||
| HL_4V49_056 | No text annotation | ||
| HL_4V49_116 | No text annotation | ||
| HL_4V49_057 | GNRA | ||
| HL_4V49_109 | No text annotation | ||
| HL_4V49_058 | No text annotation | ||
| HL_4V49_059 | No text annotation | ||
| HL_4V49_060 | No text annotation | ||
| HL_4V49_061 | No text annotation | ||
| HL_4V49_062 | No text annotation | ||
| HL_4V49_063 | No text annotation | ||
| HL_4V49_064 | GNRA | ||
| HL_4V49_065 | No text annotation | ||
| HL_4V49_066 | No text annotation | ||
| HL_4V49_110 | No text annotation | ||
| HL_4V49_067 | GNRA wlth tandem sheared | ||
| HL_4V49_068 | No text annotation | ||
| HL_4V49_069 | GNRA | ||
| HL_4V49_111 | No text annotation | ||
| HL_4V49_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V49_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V49_072 | GNRA | ||
| HL_4V49_073 | No text annotation | ||
| HL_4V49_117 | No text annotation | ||
| HL_4V49_112 | No text annotation | ||
| HL_4V49_074 | Pseudoknot | ||
| HL_4V49_075 | No text annotation | ||
| HL_4V49_076 | No text annotation | ||
| HL_4V49_077 | No text annotation | ||
| HL_4V49_078 | No text annotation | ||
| HL_4V49_079 | UNCG | ||
| HL_4V49_080 | No text annotation | ||
| HL_4V49_081 | No text annotation | ||
| HL_4V49_082 | No text annotation | ||
| HL_4V49_083 | GNRA related | ||
| HL_4V49_084 | No text annotation | ||
| HL_4V49_085 | No text annotation | ||
| HL_4V49_086 | No text annotation | ||
| HL_4V49_118 | No text annotation | ||
| HL_4V49_087 | No text annotation | ||
| HL_4V49_088 | No text annotation | ||
| HL_4V49_089 | No text annotation | ||
| HL_4V49_090 | No text annotation | ||
| HL_4V49_091 | Pseudoknot geometry | ||
| HL_4V49_092 | GNRA with extra cWW | ||
| HL_4V49_093 | GNRA | ||
| HL_4V49_094 | No text annotation | ||
| HL_4V49_095 | No text annotation | ||
| HL_4V49_096 | tRNA anticodon loop | ||
| HL_4V49_097 | No text annotation | ||
| HL_4V49_098 | GNRA | ||
| HL_4V49_113 | No text annotation | ||
| HL_4V49_099 | GNRA | ||
| HL_4V49_100 | Ribsomal LSU H95 | ||
| HL_4V49_101 | No text annotation | ||
| HL_4V49_102 | No text annotation | ||
| HL_4V49_103 | No text annotation | ||
| HL_4V49_104 | GNRA | ||
| HL_4V49_105 | UNCG | ||
| HL_4V49_106 | GNRA | ||
| HL_4V49_107 | No text annotation | ||
| HL_4V49_119 | No text annotation | ||
| HL_4V49_108 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V49_001 | Single bulged G | ||
| IL_4V49_002 | Single bulged A | ||
| IL_4V49_003 | No text annotation | ||
| IL_4V49_004 | Minor groove platform | ||
| IL_4V49_005 | Multiple bulged bases | ||
| IL_4V49_006 | No text annotation | ||
| IL_4V49_007 | Major groove minor groove platform; mini C-loop | ||
| IL_4V49_008 | Multiple bulged bases | ||
| IL_4V49_009 | No text annotation | ||
| IL_4V49_010 | tWH-tWH-tHW-tHW | ||
| IL_4V49_011 | No text annotation | ||
| IL_4V49_012 | Kink-turn with non-sequential stacking | ||
| IL_4V49_013 | No text annotation | ||
| IL_4V49_014 | C-loop | ||
| IL_4V49_015 | Single bulged U | ||
| IL_4V49_016 | C-loop | ||
| IL_4V49_017 | Single bulged G | ||
| IL_4V49_018 | No text annotation | ||
| IL_4V49_019 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V49_020 | No text annotation | ||
| IL_4V49_021 | SSU/LSU pseudoknot | ||
| IL_4V49_022 | Kink-turn related | ||
| IL_4V49_023 | No text annotation | ||
| IL_4V49_024 | tSH-tHW-tHS | ||
| IL_4V49_025 | Major groove platform | ||
| IL_4V49_026 | Major groove minor groove platform; mini C-loop | ||
| IL_4V49_027 | No text annotation | ||
| IL_4V49_028 | Major groove platform; stack outside cWW | ||
| IL_4V49_029 | Major groove platform | ||
| IL_4V49_030 | Tandem non-canonical cWW pairs | ||
| IL_4V49_170 | Triple non-canonical cWW pairs | ||
| IL_4V49_031 | No text annotation | ||
| IL_4V49_032 | Kink-turn | ||
| IL_4V49_033 | Left turn | ||
| IL_4V49_034 | tSH-tHW-tHS | ||
| IL_4V49_035 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V49_036 | Single bulged A | ||
| IL_4V49_037 | Single bulged G | ||
| IL_4V49_038 | Minor groove platform | ||
| IL_4V49_039 | Minor groove platform | ||
| IL_4V49_040 | No text annotation | ||
| IL_4V49_041 | Single bulged U | ||
| IL_4V49_042 | Isolated cWS basepair | ||
| IL_4V49_043 | Minor groove platform | ||
| IL_4V49_044 | Single bulged U | ||
| IL_4V49_045 | Isolated non-canonical cWW pair | ||
| IL_4V49_046 | No text annotation | ||
| IL_4V49_171 | No text annotation | ||
| IL_4V49_047 | Minor groove platform | ||
| IL_4V49_048 | No text annotation | ||
| IL_4V49_049 | 180 degree turn | ||
| IL_4V49_050 | Not an internal loop | ||
| IL_4V49_172 | Double sheared | ||
| IL_4V49_051 | Minor groove platform | ||
| IL_4V49_052 | No text annotation | ||
| IL_4V49_053 | No text annotation | ||
| IL_4V49_054 | No text annotation | ||
| IL_4V49_055 | Isolated non-canonical cWW pair | ||
| IL_4V49_056 | No text annotation | ||
| IL_4V49_173 | No text annotation | ||
| IL_4V49_057 | Isolated non-canonical cWW pair | ||
| IL_4V49_058 | Double sheared | ||
| IL_4V49_059 | UAA/GAN variation | ||
| IL_4V49_060 | Isolated non-canonical cWW pair | ||
| IL_4V49_061 | No text annotation | ||
| IL_4V49_174 | No text annotation | ||
| IL_4V49_062 | Double sheared | ||
| IL_4V49_063 | Triple sheared with non-canonical cWW | ||
| IL_4V49_064 | Single bulged A | ||
| IL_4V49_065 | Minor groove platform | ||
| IL_4V49_066 | Kink-turn | ||
| IL_4V49_067 | Single stack bend | ||
| IL_4V49_068 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V49_069 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V49_194 | No text annotation | ||
| IL_4V49_070 | No text annotation | ||
| IL_4V49_175 | No text annotation | ||
| IL_4V49_071 | No text annotation | ||
| IL_4V49_176 | Isolated non-canonical cWW pair | ||
| IL_4V49_072 | Isolated non-canonical cWW pair | ||
| IL_4V49_073 | Single bulged A | ||
| IL_4V49_074 | No text annotation | ||
| IL_4V49_075 | No text annotation | ||
| IL_4V49_076 | tHW-tHW cross-strand stack | ||
| IL_4V49_077 | Triple sheared with non-canonical cWW | ||
| IL_4V49_078 | No text annotation | ||
| IL_4V49_177 | No text annotation | ||
| IL_4V49_079 | Isolated non-canonical cWW pair | ||
| IL_4V49_080 | Single stack bend | ||
| IL_4V49_081 | Isolated non-canonical cWW with bulges | ||
| IL_4V49_178 | Major groove platform; stack outside cWW | ||
| IL_4V49_082 | No text annotation | ||
| IL_4V49_083 | Single stack bend | ||
| IL_4V49_084 | Isolated non-canonical cWW pair | ||
| IL_4V49_085 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V49_195 | No text annotation | ||
| IL_4V49_086 | No text annotation | ||
| IL_4V49_087 | C-loop | ||
| IL_4V49_088 | Isolated near basepair | ||
| IL_4V49_089 | No text annotation | ||
| IL_4V49_090 | Isolated non-canonical cWW pair | ||
| IL_4V49_091 | Single bulged C | ||
| IL_4V49_092 | UAA/GAN | ||
| IL_4V49_093 | Multiple bulged bases | ||
| IL_4V49_094 | Single bulged U | ||
| IL_4V49_095 | Kink-turn related | ||
| IL_4V49_096 | No text annotation | ||
| IL_4V49_097 | Isolated non-canonical cWW pair | ||
| IL_4V49_179 | No text annotation | ||
| IL_4V49_098 | No text annotation | ||
| IL_4V49_099 | No text annotation | ||
| IL_4V49_100 | No text annotation | ||
| IL_4V49_101 | Isolated cWS basepair | ||
| IL_4V49_102 | Isolated non-canonical cWW pair | ||
| IL_4V49_180 | No text annotation | ||
| IL_4V49_103 | Kink-turn | ||
| IL_4V49_104 | No text annotation | ||
| IL_4V49_196 | Intercalated cWW | ||
| IL_4V49_105 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V49_106 | C-loop | ||
| IL_4V49_107 | UAA/GAN | ||
| IL_4V49_181 | No text annotation | ||
| IL_4V49_108 | tSH-tHW-tHS | ||
| IL_4V49_109 | Kink-turn | ||
| IL_4V49_110 | No text annotation | ||
| IL_4V49_182 | No text annotation | ||
| IL_4V49_111 | No text annotation | ||
| IL_4V49_112 | tSH-tHW | ||
| IL_4V49_113 | Single stack bend | ||
| IL_4V49_114 | Single bulged C | ||
| IL_4V49_183 | No text annotation | ||
| IL_4V49_115 | No text annotation | ||
| IL_4V49_116 | No text annotation | ||
| IL_4V49_197 | No text annotation | ||
| IL_4V49_117 | No text annotation | ||
| IL_4V49_118 | No text annotation | ||
| IL_4V49_119 | No text annotation | ||
| IL_4V49_184 | No text annotation | ||
| IL_4V49_120 | No text annotation | ||
| IL_4V49_121 | Major groove platform; stack outside cWW | ||
| IL_4V49_185 | No text annotation | ||
| IL_4V49_122 | Intercalated tWH | ||
| IL_4V49_123 | tSH-tSH-tHH-tHS | ||
| IL_4V49_124 | Isolated non-canonical cWW pair | ||
| IL_4V49_125 | Kink-turn related | ||
| IL_4V49_126 | Minor groove platform, major groove intercalation | ||
| IL_4V49_186 | Major groove intercalation | ||
| IL_4V49_127 | Isolated non-canonical cWW with bulges | ||
| IL_4V49_128 | Major groove minor groove platform; mini C-loop | ||
| IL_4V49_129 | No text annotation | ||
| IL_4V49_187 | No text annotation | ||
| IL_4V49_130 | Triple sheared | ||
| IL_4V49_188 | UAA/GAN variation | ||
| IL_4V49_189 | No text annotation | ||
| IL_4V49_131 | No text annotation | ||
| IL_4V49_198 | Major groove platform | ||
| IL_4V49_132 | No text annotation | ||
| IL_4V49_133 | No text annotation | ||
| IL_4V49_199 | No text annotation | ||
| IL_4V49_134 | Single bulged U | ||
| IL_4V49_135 | Minor groove platform | ||
| IL_4V49_136 | Isolated tHS basepair with bulges | ||
| IL_4V49_137 | Isolated non-canonical cWW pair | ||
| IL_4V49_138 | No text annotation | ||
| IL_4V49_190 | No text annotation | ||
| IL_4V49_139 | Double sheared | ||
| IL_4V49_140 | Isolated non-canonical cWW pair | ||
| IL_4V49_200 | Major groove platform | ||
| IL_4V49_141 | Single stack bend | ||
| IL_4V49_142 | Major groove platform | ||
| IL_4V49_143 | Major groove platform with extra pair | ||
| IL_4V49_191 | Major groove platform | ||
| IL_4V49_144 | Major groove platform with extra cWW | ||
| IL_4V49_145 | Triple sheared | ||
| IL_4V49_146 | Major groove platform | ||
| IL_4V49_147 | Isolated non-canonical cWW pair | ||
| IL_4V49_148 | Multiple bulged bases | ||
| IL_4V49_149 | No text annotation | ||
| IL_4V49_192 | Major groove platform with intercalation | ||
| IL_4V49_150 | Single bulged A | ||
| IL_4V49_151 | tSH-tHS-tHW | ||
| IL_4V49_152 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V49_201 | C-loop | ||
| IL_4V49_193 | No text annotation | ||
| IL_4V49_153 | No text annotation | ||
| IL_4V49_154 | No text annotation | ||
| IL_4V49_155 | Multiple bulged bases | ||
| IL_4V49_156 | UAA/GAN with extra cWW | ||
| IL_4V49_157 | Major groove intercalation | ||
| IL_4V49_158 | Decoding loop related | ||
| IL_4V49_159 | No text annotation | ||
| IL_4V49_160 | Other IL | ||
| IL_4V49_161 | No text annotation | ||
| IL_4V49_162 | No text annotation | ||
| IL_4V49_163 | No text annotation | ||
| IL_4V49_164 | Kink-turn | ||
| IL_4V49_165 | Isolated non-canonical cWW with bulges | ||
| IL_4V49_166 | No text annotation | ||
| IL_4V49_167 | Major groove intercalation | ||
| IL_4V49_168 | No text annotation | ||
| IL_4V49_169 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V49_001 | No text annotation | ||
| J3_4V49_025 | No text annotation | ||
| J3_4V49_002 | No text annotation | ||
| J3_4V49_026 | No text annotation | ||
| J3_4V49_003 | No text annotation | ||
| J3_4V49_004 | No text annotation | ||
| J3_4V49_005 | No text annotation | ||
| J3_4V49_006 | No text annotation | ||
| J3_4V49_007 | No text annotation | ||
| J3_4V49_008 | No text annotation | ||
| J3_4V49_027 | No text annotation | ||
| J3_4V49_028 | No text annotation | ||
| J3_4V49_009 | No text annotation | ||
| J3_4V49_010 | No text annotation | ||
| J3_4V49_029 | No text annotation | ||
| J3_4V49_011 | No text annotation | ||
| J3_4V49_012 | No text annotation | ||
| J3_4V49_013 | No text annotation | ||
| J3_4V49_030 | No text annotation | ||
| J3_4V49_031 | No text annotation | ||
| J3_4V49_032 | No text annotation | ||
| J3_4V49_014 | No text annotation | ||
| J3_4V49_015 | No text annotation | ||
| J3_4V49_016 | No text annotation | ||
| J3_4V49_017 | No text annotation | ||
| J3_4V49_036 | No text annotation | ||
| J3_4V49_018 | No text annotation | ||
| J3_4V49_019 | No text annotation | ||
| J3_4V49_020 | No text annotation | ||
| J3_4V49_033 | No text annotation | ||
| J3_4V49_034 | No text annotation | ||
| J3_4V49_035 | No text annotation | ||
| J3_4V49_021 | No text annotation | ||
| J3_4V49_022 | No text annotation | ||
| J3_4V49_023 | No text annotation | ||
| J3_4V49_037 | No text annotation | ||
| J3_4V49_024 | No text annotation | ||
| J4_4V49_001 | No text annotation | ||
| J4_4V49_002 | No text annotation | ||
| J4_4V49_003 | No text annotation | ||
| J4_4V49_004 | No text annotation | ||
| J4_4V49_005 | tRNA junction | ||
| J4_4V49_015 | No text annotation | ||
| J4_4V49_006 | No text annotation | ||
| J4_4V49_007 | No text annotation | ||
| J4_4V49_016 | No text annotation | ||
| J4_4V49_008 | No text annotation | ||
| J4_4V49_009 | No text annotation | ||
| J4_4V49_017 | No text annotation | ||
| J4_4V49_010 | No text annotation | ||
| J4_4V49_011 | No text annotation | ||
| J4_4V49_012 | No text annotation | ||
| J4_4V49_013 | No text annotation | ||
| J4_4V49_014 | No text annotation | ||
| J5_4V49_001 | No text annotation | ||
| J5_4V49_002 | No text annotation | ||
| J5_4V49_003 | No text annotation | ||
| J5_4V49_004 | No text annotation | ||
| J5_4V49_005 | No text annotation | ||
| J5_4V49_006 | No text annotation | ||
| J6_4V49_001 | No text annotation | ||
| J6_4V49_002 | No text annotation | ||
| J7_4V49_002 | No text annotation | ||
| J7_4V49_001 | No text annotation | ||
| J11_4V49_002 | No text annotation | ||
| J11_4V49_001 | No text annotation |
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